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THAPS_263116 rubredoxin, rubredoxin-type Fe4 protein [ Thalassiosira pseudonana CCMP1335 ]

Gene ID: 7449180, updated on 21-Dec-2023

Summary

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Gene symbol
THAPS_263116
Gene description
rubredoxin, rubredoxin-type Fe4 protein
Locus tag
THAPS_263116
Gene type
protein coding
RNA name
rubredoxin, rubredoxin-type Fe4 protein
RefSeq status
PROVISIONAL
Organism
Thalassiosira pseudonana CCMP1335 (strain: CCMP1335)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira
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Genomic context

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Location:
chromosome: 7
Exon count:
1
Sequence:
Chromosome: 7; NC_012070.1 (608243..608665)

Chromosome 7 - NC_012070.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012070.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Armbrust EV, et al. Science, 2004 Oct 1. PMID 15459382
  2. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables electron transfer activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables iron ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in alkane catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
rubredoxin, rubredoxin-type Fe4 protein
XP_002295767.1
  • may function in plastid; Cys

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012070.1 Reference assembly

    Range
    608243..608665
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002295731.1 → XP_002295767.1  rubredoxin, rubredoxin-type Fe4 protein, partial [Thalassiosira pseudonana CCMP1335]

    See identical proteins and their annotated locations for XP_002295767.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B5YMM0
    Conserved Domains (2) summary
    COG1773
    Location:37 → 95
    YgaK; Rubredoxin [Energy production and conversion]
    cd00730
    Location:44 → 95
    rubredoxin; Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are ...
Nucleotide Protein
Heading Accession and Version

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