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THAPSDRAFT_23018 hypothetical protein [ Thalassiosira pseudonana CCMP1335 ]

Gene ID: 7448561, updated on 11-Apr-2024

Summary

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Gene symbol
THAPSDRAFT_23018
Gene description
hypothetical protein
Locus tag
THAPSDRAFT_23018
Gene type
protein coding
RNA name
predicted protein
RefSeq status
PROVISIONAL
Organism
Thalassiosira pseudonana CCMP1335 (strain: CCMP1335)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira
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Genomic context

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Location:
chromosome: 6
Exon count:
1
Sequence:
Chromosome: 6; NC_012069.1 (488534..489744)

Chromosome 6 - NC_012069.1Genomic Context describing neighboring genes Neighboring gene WD40-repeat protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012069.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Armbrust EV, et al. Science, 2004 Oct 1. PMID 15459382
  2. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in TRAMP-dependent tRNA surveillance pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in U1 snRNA 3'-end processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in U4 snRNA 3'-end processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in U5 snRNA 3'-end processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nuclear mRNA surveillance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nuclear polyadenylation-dependent mRNA catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nuclear polyadenylation-dependent rRNA catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of cytoplasmic exosome (RNase complex) IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of nuclear exosome (RNase complex) IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
hypothetical protein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012069.1 Reference assembly

    Range
    488534..489744
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002290944.1 → XP_002290980.1  predicted protein [Thalassiosira pseudonana CCMP1335]

    See identical proteins and their annotated locations for XP_002290980.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B8C5B2
    Conserved Domains (1) summary
    cl03114
    Location:2 → 200
    RNase_PH; RNase PH-like 3'-5' exoribonucleases
Nucleotide Protein
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