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THAPSDRAFT_29850 hypothetical protein [ Thalassiosira pseudonana CCMP1335 ]

Gene ID: 7446937, updated on 21-Dec-2023

Summary

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Gene symbol
THAPSDRAFT_29850
Gene description
hypothetical protein
Locus tag
THAPSDRAFT_29850
Gene type
protein coding
RNA name
hypothetical protein
RefSeq status
PROVISIONAL
Organism
Thalassiosira pseudonana CCMP1335 (strain: CCMP1335)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira
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Genomic context

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See THAPSDRAFT_29850 in Genome Data Viewer
Location:
chromosome: 13
Exon count:
2
Sequence:
Chromosome: 13; NC_012076.1 (544489..546195, complement)

Chromosome 13 - NC_012076.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012076.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Armbrust EV, et al. Science, 2004 Oct 1. PMID 15459382
  2. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 4 iron, 4 sulfur cluster binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables FMN binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables NAD binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables NADH dehydrogenase (ubiquinone) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mitochondrial electron transport, NADH to ubiquinone IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of mitochondrial respiratory chain complex I IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
hypothetical protein
XP_002293580.1
  • Putatively targeted to mitochondrion; NDI

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012076.1 Reference assembly

    Range
    544489..546195 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002293544.1 → XP_002293580.1  hypothetical protein THAPSDRAFT_29850 [Thalassiosira pseudonana CCMP1335]

    See identical proteins and their annotated locations for XP_002293580.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B8CBG7
    Conserved Domains (4) summary
    PLN03132
    Location:16 → 474
    PLN03132; NADH dehydrogenase (ubiquinone) flavoprotein 1; Provisional
    pfam01512
    Location:89 → 258
    Complex1_51K; Respiratory-chain NADH dehydrogenase 51 Kd subunit
    pfam10531
    Location:284 → 336
    SLBB; SLBB domain
    pfam10589
    Location:375 → 456
    NADH_4Fe-4S; NADH-ubiquinone oxidoreductase-F iron-sulfur binding region
Nucleotide Protein
Heading Accession and Version

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