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THAPSDRAFT_40323 CPSase [ Thalassiosira pseudonana CCMP1335 ]

Gene ID: 7446089, updated on 21-Dec-2023

Summary

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Gene symbol
THAPSDRAFT_40323
Gene description
CPSase
Locus tag
THAPSDRAFT_40323
Gene type
protein coding
RNA name
CPSase
RefSeq status
PROVISIONAL
Organism
Thalassiosira pseudonana CCMP1335 (strain: CCMP1335)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira
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Genomic context

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Location:
chromosome: 4
Exon count:
5
Sequence:
Chromosome: 4; NC_012067.1 (1183906..1188788)

Chromosome 4 - NC_012067.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012067.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Armbrust EV, et al. Science, 2004 Oct 1. PMID 15459382
  2. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in 'de novo' pyrimidine nucleobase biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in glutamine metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
CPSase
XP_002289336.1
  • in addition to ANDY annotation: the gene is a fusion of small (CarA) and large (CarB) subunits of CPS. The protein is putatively targeted to mitochondrion, this supports that it is involved in urea cycle.

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012067.1 Reference assembly

    Range
    1183906..1188788
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002289300.1 → XP_002289336.1  CPSase [Thalassiosira pseudonana CCMP1335]

    See identical proteins and their annotated locations for XP_002289336.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B8BZG0
    Conserved Domains (8) summary
    cd01744
    Location:196 → 373
    GATase1_CPSase; Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II
    COG0505
    Location:16 → 378
    CarA; Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism, Nucleotide transport and metabolism]
    cd01423
    Location:1334 → 1447
    MGS_CPS_I_III; Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
    TIGR01369
    Location:392 → 1448
    CPSaseII_lrg; carbamoyl-phosphate synthase, large subunit
    pfam00988
    Location:16 → 153
    CPSase_sm_chain; Carbamoyl-phosphate synthase small chain, CPSase domain
    pfam02786
    Location:524 → 726
    CPSase_L_D2; Carbamoyl-phosphate synthase L chain, ATP binding domain
    pfam02787
    Location:814 → 936
    CPSase_L_D3; Carbamoyl-phosphate synthetase large chain, oligomerization domain
    cl17255
    Location:1062 → 1259
    ATP-grasp_4; ATP-grasp domain
Nucleotide Protein
Heading Accession and Version

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