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PSA5 proteasome subunit alpha type 5 [ Thalassiosira pseudonana CCMP1335 ]

Gene ID: 7441815, updated on 21-Dec-2023

Summary

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Gene symbol
PSA5
Gene description
proteasome subunit alpha type 5
Locus tag
THAPSDRAFT_30075
Gene type
protein coding
RNA name
proteasome subunit alpha type 5
RefSeq status
PROVISIONAL
Organism
Thalassiosira pseudonana CCMP1335 (strain: CCMP1335)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira
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Genomic context

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See PSA5 in Genome Data Viewer
Location:
chromosome: 14
Exon count:
2
Sequence:
Chromosome: 14; NC_012077.1 (784684..785928)

Chromosome 14 - NC_012077.1Genomic Context describing neighboring genes Neighboring gene annexin Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene RS25, ribosomal protein 25 40S small ribosomal subunit

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012077.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Armbrust EV, et al. Science, 2004 Oct 1. PMID 15459382
  2. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in proteasome-mediated ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of proteasome core complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of proteasome core complex, alpha-subunit complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
proteasome subunit alpha type 5
XP_002293808.1
  • Proteasome subunit alpha type 5-2 (20S proteasome alpha subunit E2) (model%: 100, hit%: 100, score: 824, %id: 68) [Arabidopsis thaliana]; 20S proteasome

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012077.1 Reference assembly

    Range
    784684..785928
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002293772.1 → XP_002293808.1  proteasome subunit alpha type 5 [Thalassiosira pseudonana CCMP1335]

    See identical proteins and their annotated locations for XP_002293808.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B8CCQ3
    Conserved Domains (2) summary
    PRK03996
    Location:8 → 244
    PRK03996; proteasome subunit alpha; Provisional
    cd03753
    Location:8 → 223
    proteasome_alpha_type_5; proteasome_alpha_type_5. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on ...
Nucleotide Protein
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Molecular Biology Databases