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Polr3c polymerase (RNA) III (DNA directed) polypeptide C [ Mus musculus (house mouse) ]

Gene ID: 74414, updated on 8-May-2016
Official Symbol
Polr3cprovided by MGI
Official Full Name
polymerase (RNA) III (DNA directed) polypeptide Cprovided by MGI
Primary source
MGI:MGI:1921664
See related
Ensembl:ENSMUSG00000028099 Vega:OTTMUSG00000033832
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
RPC3; RPC62; 4933407E01Rik
Orthologs
Location:
3; 3 F2
Exon count:
15
Annotation release Status Assembly Chr Location
105 current GRCm38.p3 (GCF_000001635.23) 3 NC_000069.6 (96711520..96727480, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 3 NC_000069.5 (96515818..96531362, complement)

Chromosome 3 - NC_000069.6Genomic Context describing neighboring genes Neighboring gene ankyrin repeat domain 35 Neighboring gene protein inhibitor of activated STAT 3 Neighboring gene nudix (nucleoside diphosphate linked moiety X)-type motif 17 Neighboring gene ring finger protein 115 Neighboring gene CD160 antigen

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
DNA binding IEA
Inferred from Electronic Annotation
more info
 
DNA-directed RNA polymerase activity IEA
Inferred from Electronic Annotation
more info
 
contributes_to RNA polymerase III activity IBA
Inferred from Biological aspect of Ancestor
more info
 
nucleotidyltransferase activity IEA
Inferred from Electronic Annotation
more info
 
transferase activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
defense response to virus IEA
Inferred from Electronic Annotation
more info
 
immune system process IEA
Inferred from Electronic Annotation
more info
 
innate immune response IEA
Inferred from Electronic Annotation
more info
 
positive regulation of innate immune response ISO
Inferred from Sequence Orthology
more info
 
positive regulation of interferon-beta production ISO
Inferred from Sequence Orthology
more info
 
transcription, DNA-templated IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
DNA-directed RNA polymerase III complex IBA
Inferred from Biological aspect of Ancestor
more info
 
DNA-directed RNA polymerase III complex ISO
Inferred from Sequence Orthology
more info
 
nucleoplasm ISO
Inferred from Sequence Orthology
more info
 
nucleus ISO
Inferred from Sequence Orthology
more info
 
Preferred Names
DNA-directed RNA polymerase III subunit RPC3
Names
DNA-directed RNA polymerase III subunit C
RNA polymerase III subunit C3

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_028925.1NP_083201.1  DNA-directed RNA polymerase III subunit RPC3

    See identical proteins and their annotated locations for NP_083201.1

    Status: PROVISIONAL

    Source sequence(s)
    BC151028
    Consensus CDS
    CCDS51010.1
    UniProtKB/Swiss-Prot
    Q9D483
    UniProtKB/TrEMBL
    B2RX77
    Related
    ENSMUSP00000029741, OTTMUSP00000046020, ENSMUST00000029741, OTTMUST00000085229
    Conserved Domains (2) summary
    pfam08221
    Location:768
    HTH_9; RNA polymerase III subunit RPC82 helix-turn-helix domain
    pfam05645
    Location:146344
    RNA_pol_Rpc82; RNA polymerase III subunit RPC82

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 105 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p3 C57BL/6J

Genomic

  1. NC_000069.6 Reference GRCm38.p3 C57BL/6J

    Range
    96711520..96727480 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006502188.2XP_006502251.1  

    Conserved Domains (1) summary
    pfam05645
    Location:62260
    RNA_pol_Rpc82; RNA polymerase III subunit RPC82
  2. XM_006502187.2XP_006502250.1  

    See identical proteins and their annotated locations for XP_006502250.1

    UniProtKB/Swiss-Prot
    Q9D483
    UniProtKB/TrEMBL
    B2RX77
    Related
    ENSMUSP00000122435, OTTMUSP00000046023, ENSMUST00000154679, OTTMUST00000085233
    Conserved Domains (2) summary
    pfam08221
    Location:768
    HTH_9; RNA polymerase III subunit RPC82 helix-turn-helix domain
    pfam05645
    Location:146344
    RNA_pol_Rpc82; RNA polymerase III subunit RPC82

RNA

  1. XR_867239.1 RNA Sequence

  2. XR_375595.1 RNA Sequence

Alternate Mm_Celera

Genomic

  1. AC_000025.1 Alternate Mm_Celera

    Range
    98120927..98136493 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)