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Poldip3 polymerase (DNA-directed), delta interacting protein 3 [ Mus musculus (house mouse) ]

Gene ID: 73826, updated on 28-May-2016
Official Symbol
Poldip3provided by MGI
Official Full Name
polymerase (DNA-directed), delta interacting protein 3provided by MGI
Primary source
MGI:MGI:1921076
See related
Ensembl:ENSMUSG00000041815 Vega:OTTMUSG00000032613
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
SKAR; C77954; PDIP46; AA408269; AL022852; mKIAA1649; 1110008P04Rik
Orthologs
Location:
15; 15 E1
Exon count:
9
Annotation release Status Assembly Chr Location
105 current GRCm38.p3 (GCF_000001635.23) 15 NC_000081.6 (83125976..83149373, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 15 NC_000081.5 (82956408..82979766, complement)

Chromosome 15 - NC_000081.6Genomic Context describing neighboring genes Neighboring gene predicted gene, 41366 Neighboring gene serine hydrolase-like Neighboring gene ribosomal RNA processing 7 homolog A (S. cerevisiae) Neighboring gene RNA U12, small nuclear Neighboring gene cytochrome b5 reductase 3

Products Interactant Other Gene Complex Source Pubs Description

Markers

Homology

Clone Names

  • KIAA1649

Gene Ontology Provided by MGI

Function Evidence Code Pubs
RNA binding IEA
Inferred from Electronic Annotation
more info
 
nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 
nucleotide binding IEA
Inferred from Electronic Annotation
more info
 
poly(A) RNA binding ISO
Inferred from Sequence Orthology
more info
 
Process Evidence Code Pubs
mRNA transport IEA
Inferred from Electronic Annotation
more info
 
poly(A)+ mRNA export from nucleus IDA
Inferred from Direct Assay
more info
PubMed 
poly(A)+ mRNA export from nucleus ISO
Inferred from Sequence Orthology
more info
 
positive regulation of translation ISO
Inferred from Sequence Orthology
more info
 
regulation of translation IEA
Inferred from Electronic Annotation
more info
 
transport IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
cytoplasm IEA
Inferred from Electronic Annotation
more info
 
colocalizes_with exon-exon junction complex ISO
Inferred from Sequence Orthology
more info
 
intracellular membrane-bounded organelle ISO
Inferred from Sequence Orthology
more info
 
nuclear speck ISO
Inferred from Sequence Orthology
more info
 
nucleoplasm ISO
Inferred from Sequence Orthology
more info
 
nucleus IEA
Inferred from Electronic Annotation
more info
 
colocalizes_with transcription export complex ISO
Inferred from Sequence Orthology
more info
 
Preferred Names
polymerase delta-interacting protein 3
Names
S6K1 Aly/REF-like target
polymerase delta interacting protein 46

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_178627.3NP_848742.1  polymerase delta-interacting protein 3

    See identical proteins and their annotated locations for NP_848742.1

    Status: PROVISIONAL

    Source sequence(s)
    AL591952
    Consensus CDS
    CCDS27697.1
    UniProtKB/Swiss-Prot
    Q8BG81
    Related
    ENSMUSP00000054548, OTTMUSP00000043330, ENSMUST00000058793, OTTMUST00000081105
    Conserved Domains (2) summary
    smart00360
    Location:284346
    RRM; RNA recognition motif
    cd12681
    Location:280348
    RRM_SKAR; RNA recognition motif in S6K1 Aly/REF-like target (SKAR) and similar proteins

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 105 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p3 C57BL/6J

Genomic

  1. NC_000081.6 Reference GRCm38.p3 C57BL/6J

    Range
    83125976..83149373 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006521485.1XP_006521548.1  

    See identical proteins and their annotated locations for XP_006521548.1

    UniProtKB/TrEMBL
    Q3UDD3
    Related
    ENSMUSP00000097944, OTTMUSP00000043331, ENSMUST00000100375, OTTMUST00000081107
    Conserved Domains (2) summary
    smart00360
    Location:255317
    RRM; RNA recognition motif
    cd12681
    Location:251319
    RRM_SKAR; RNA recognition motif in S6K1 Aly/REF-like target (SKAR) and similar proteins

Alternate Mm_Celera

Genomic

  1. AC_000037.1 Alternate Mm_Celera

    Range
    85259312..85282642 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)