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dhx38 DEAH-box helicase 38 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 734019, updated on 5-Mar-2024

Summary

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Official Symbol
dhx38provided by Xenbase
Official Full Name
DEAH-box helicase 38provided by Xenbase
Primary source
Xenbase:XB-GENE-990308
See related
Ensembl:ENSXETG00000023447
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 4
Exon count:
26
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 4 NC_030680.2 (60095693..60116337)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 4 NC_030680.1 (63226657..63246577, complement)

Chromosome 4 - NC_030680.2Genomic Context describing neighboring genes Neighboring gene polycystic kidney disease protein 1-like 2 Neighboring gene dihydroorotate dehydrogenase (quinone) Neighboring gene polyamine modulated factor 1 binding protein 1 Neighboring gene zinc finger homeobox 3 Neighboring gene uncharacterized LOC105947251 Neighboring gene uncharacterized LOC116410400

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
  
enables helicase activity IEA
Inferred from Electronic Annotation
more info
  
enables hydrolase activity IEA
Inferred from Electronic Annotation
more info
  
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
  
enables nucleotide binding IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in intracellular organelle IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16
Names
DEAH (Asp-Glu-Ala-His) box polypeptide 38

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030680.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    60095693..60116337
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012962327.3 → XP_012817781.1  pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16

    See identical proteins and their annotated locations for XP_012817781.1

    UniProtKB/TrEMBL
    A0A8J0QSY7, F7C116
    Conserved Domains (1) summary
    COG1643
    Location:483 → 1131
    HrpA; HrpA-like RNA helicase [Translation, ribosomal structure and biogenesis]

  2. XM_002937580.5 → XP_002937626.2  pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16

    See identical proteins and their annotated locations for XP_002937626.2

    UniProtKB/TrEMBL
    A0A8J0QSY7, F7C116
    Related
    ENSXETP00000078443.2, ENSXETT00000070071.2
    Conserved Domains (1) summary
    COG1643
    Location:483 → 1131
    HrpA; HrpA-like RNA helicase [Translation, ribosomal structure and biogenesis]
Nucleotide Protein Strain
Heading Accession and Version

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