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LINC01776 long intergenic non-protein coding RNA 1776 [ Homo sapiens (human) ]

Gene ID: 729987, updated on 10-Oct-2023

Summary

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Official Symbol
LINC01776provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1776provided by HGNC
Primary source
HGNC:HGNC:52566
See related
Ensembl:ENSG00000226053 AllianceGenome:HGNC:52566
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
1p21.3
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (98210711..98272658)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (98058560..98120483)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (98676267..98738214)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene MIR137 host gene Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1110 Neighboring gene uncharacterized LOC124900404 Neighboring gene NANOG hESC enhancer GRCh37_chr1:98552438-98552987 Neighboring gene microRNA 137 Neighboring gene NFU1 iron-sulfur cluster scaffold pseudogene 2 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:98670662-98671305 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr1:98789036-98790235 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr1:98816624-98817823 Neighboring gene uncharacterized LOC124904229 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr1:98981623-98982822 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:99054546-99055107 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1111 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1112 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1113 Neighboring gene sorting nexin 7

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Markers

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_046088.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AK090562, AL137794
    Related
    ENST00000418344.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    98210711..98272658
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    98058560..98120483
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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