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OC90 otoconin 90 [ Homo sapiens (human) ]

Gene ID: 729330, updated on 8-Aug-2016
Official Symbol
OC90provided by HGNC
Official Full Name
otoconin 90provided by HGNC
Primary source
HGNC:HGNC:8100
See related
Ensembl:ENSG00000253117 MIM:601658; Vega:OTTHUMG00000164672
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
PLA2L
Orthologs
Location:
8q24.22
Exon count:
14
Annotation release Status Assembly Chr Location
108 current GRCh38.p7 (GCF_000001405.33) 8 NC_000008.11 (132024220..132059380, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 8 NC_000008.10 (133036467..133071627, complement)

Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107986976 Neighboring gene EFR3 homolog A Neighboring gene HERV-H LTR-associating 1 Neighboring gene potassium voltage-gated channel subfamily Q member 3 Neighboring gene uncharacterized LOC107986977

NHGRI GWAS Catalog

Description
Genome-Wide Association Study of Primary Dentition Pit-and-Fissure and Smooth Surface Caries.
NHGRI GWA Catalog
Products Interactant Other Gene Complex Source Pubs Description

Markers

Homology

Gene Ontology Provided by GOA

Function Evidence Code Pubs
calcium ion binding IEA
Inferred from Electronic Annotation
more info
 
molecular_function ND
No biological Data available
more info
 
phospholipase A2 activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
biological_process ND
No biological Data available
more info
 
lipid catabolic process IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
cellular_component ND
No biological Data available
more info
 
extracellular region IEA
Inferred from Electronic Annotation
more info
 
Preferred Names
otoconin-90
Names
phospholipase A2 homolog

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001080399.2NP_001073868.2  otoconin-90 precursor

    Status: VALIDATED

    Source sequence(s)
    AC100868, AK297911
    Consensus CDS
    CCDS47919.1
    UniProtKB/Swiss-Prot
    Q02509
    Related
    ENSP00000254627, OTTHUMP00000227190, ENST00000254627, OTTHUMT00000379693
    Conserved Domains (1) summary
    cd04707
    Location:307423
    otoconin_90; otoconin_90: Phospholipase A2-like domains present in otoconin-90 and otoconin-95, mammal proteins that are principal matrix proteins of calcitic otoconia. Interactions involving otoconin-90 may trigger or constitute key events in otoconia formation. The ...

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 108 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p7 Primary Assembly

Genomic

  1. NC_000008.11 Reference GRCh38.p7 Primary Assembly

    Range
    132024220..132059380 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate CHM1_1.1

Genomic

  1. NC_018919.2 Alternate CHM1_1.1

    Range
    133076804..133112437 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)