These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in this
section to the one reported in Genomic regions, transcripts, and products above.
mRNA and Protein(s)
-
NM_001001894.1 → NP_001001894.1 E3 ubiquitin-protein ligase TTC3
Status: VALIDATED
- Description
- Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. Variants 1 and 2 both encode the same protein.
- Source sequence(s)
-
BC063033, BI915053, BQ893819, CA420000, D83327, D84296
- Consensus CDS
-
CCDS13651.1
- UniProtKB/Swiss-Prot
-
P53804
- Related
- ENSP00000347889, ENST00000355666
- Conserved Domains (3) summary
-
- cd00162
Location:1956 – 1996
Blast Score: 117
- RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...
- cd00189
Location:232 – 331
Blast Score: 187
- TPR; Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, ...
- pfam13414
Location:229 – 291
Blast Score: 132
- TPR_11; TPR repeat
-
NM_003316.3 → NP_003307.3 E3 ubiquitin-protein ligase TTC3
Status: VALIDATED
- Description
- Transcript Variant: This variant (1) represents the longer transcript. Variants 1 and 2 both encode the same protein.
- Source sequence(s)
-
BQ893819, CA420000, D83077, D83327, D84296
- Consensus CDS
-
CCDS13651.1
- UniProtKB/Swiss-Prot
-
P53804
- Related
- ENSP00000381981, OTTHUMP00000109082, ENST00000399017, OTTHUMT00000194776
- Conserved Domains (3) summary
-
- cd00162
Location:1956 – 1996
Blast Score: 117
- RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...
- cd00189
Location:232 – 331
Blast Score: 187
- TPR; Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, ...
- pfam13414
Location:229 – 291
Blast Score: 132
- TPR_11; TPR repeat
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as RefSeqs
for chromosomes and scaffolds (contigs) from both reference and alternate assemblies.
Model RNAs and proteins are also reported here.
Reference GRCh37.p5 Primary Assembly
Genomic
-
NC_000021.8 Reference GRCh37.p5 Primary Assembly
- Range
- 38445571..38575408
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
Alternate HuRef
Genomic
-
AC_000153.1 Alternate HuRef
- Range
- 23921184..24051240
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)