These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in this
section to the one reported in Genomic regions, transcripts, and products above.
mRNA and Protein(s)
-
NM_001008800.2 → NP_001008800.1 T-complex protein 1 subunit gamma isoform c
Status: REVIEWED
- Description
- Transcript Variant: This variant (3) lacks two alternate in-frame exons, compared to variant 1, resulting in a shorter protein (isoform c), compared to isoform a.
- Source sequence(s)
-
AK126400, AK293477, BG476176
- Consensus CDS
-
CCDS30888.1
- UniProtKB/TrEMBL
-
B3KX11
- UniProtKB/Swiss-Prot
-
P49368
- Related
- ENSP00000357242, OTTHUMP00000231494, ENST00000368259, OTTHUMT00000387013
- Conserved Domains (2) summary
-
- cd03337
Location:6 – 487
Blast Score: 1923
- TCP1_gamma; TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins ...
- pfam00118
Location:32 – 486
Blast Score: 1170
- Cpn60_TCP1; TCP-1/cpn60 chaperonin family
-
NM_005998.4 → NP_005989.3 T-complex protein 1 subunit gamma isoform a
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) encodes the longer isoform (a).
- Source sequence(s)
-
AB208882, AK126400, BG476176
- Consensus CDS
-
CCDS1140.2
- UniProtKB/TrEMBL
-
B3KX11
- UniProtKB/Swiss-Prot
-
P49368
- UniProtKB/TrEMBL
-
Q59H77
- Related
- ENSP00000295688, OTTHUMP00000025735, ENST00000295688, OTTHUMT00000060602
- Conserved Domains (2) summary
-
- cd03337
Location:6 – 525
Blast Score: 2184
- TCP1_gamma; TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins ...
- pfam00118
Location:33 – 524
Blast Score: 1308
- Cpn60_TCP1; TCP-1/cpn60 chaperonin family
RNA
-
NR_036564.1 RNA Sequence
Status: REVIEWED
- Description
- Transcript Variant: This variant (4) contains an alternate internal exon compared to variant 1. This variant is represented as non-coding because the use of the 5'-most supported translational start codon, as used in variant 1, renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
- Source sequence(s)
-
AK126400, AK300765, BG476176
-
NR_036565.1 RNA Sequence
Status: REVIEWED
- Description
- Transcript Variant: This variant (5) contains an alternate internal exon compared to variant 1. This variant is represented as non-coding because the use of the 5'-most supported translational start codon, as used in variant 1, renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
- Source sequence(s)
-
AK126400, AK316387, BG476176
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as RefSeqs
for chromosomes and scaffolds (contigs) from both reference and alternate assemblies.
Model RNAs and proteins are also reported here.
Reference GRCh37.p10 Primary Assembly
Genomic
-
NC_000001.10 Reference GRCh37.p10 Primary Assembly
- Range
- 156278752..156308206, complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
Alternate HuRef
Genomic
-
AC_000133.1 Alternate HuRef
- Range
- 127638812..127668494, complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
Alternate CHM1_1.0
Genomic
-
NC_018912.1 Alternate CHM1_1.0
- Range
- 162779581..162809056, complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
The following Reference Sequences have been suppressed. Explain
These RefSeqs were suppressed for the cited
reason(s). Suppressed RefSeqs do not appear in BLAST databases, related sequence links,
or BLAST links (BLink), but may still be retrieved by clicking on their
accession.version below.
-
NM_001008883.1: Suppressed sequence
- Description
- NM_001008883.1: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript and the protein.