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Smg9 smg-9 homolog, nonsense mediated mRNA decay factor (C. elegans) [ Mus musculus (house mouse) ]

Gene ID: 71997, updated on 26-May-2016
Official Symbol
Smg9provided by MGI
Official Full Name
smg-9 homolog, nonsense mediated mRNA decay factor (C. elegans)provided by MGI
Primary source
MGI:MGI:1919247
See related
Ensembl:ENSMUSG00000002210 Vega:OTTMUSG00000022275
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
N28092; AI429693; 1500002O20Rik
Orthologs
Location:
7; 7 A3
Exon count:
15
Annotation release Status Assembly Chr Location
105 current GRCm38.p3 (GCF_000001635.23) 7 NC_000073.6 (24398910..24422777)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 7 NC_000073.5 (25184647..25207796)

Chromosome 7 - NC_000073.6Genomic Context describing neighboring genes Neighboring gene predicted gene, 38964 Neighboring gene potassium intermediate/small conductance calcium-activated channel, subfamily N, member 4 Neighboring gene immunity-related GTPase family, cinema 1 Neighboring gene predicted gene, 36159

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (2) 
  • Endonuclease-mediated (1) 

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
identical protein binding ISO
Inferred from Sequence Orthology
more info
 
Process Evidence Code Pubs
nuclear-transcribed mRNA catabolic process, nonsense-mediated decay ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
intracellular ISO
Inferred from Sequence Orthology
more info
 
Preferred Names
protein SMG9
Names
protein smg-9 homolog

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_028047.2NP_082323.1  protein SMG9

    See identical proteins and their annotated locations for NP_082323.1

    Status: PROVISIONAL

    Source sequence(s)
    AC159140
    Consensus CDS
    CCDS20949.1
    UniProtKB/Swiss-Prot
    Q9DB90
    Related
    ENSMUSP00000002280, OTTMUSP00000025208, ENSMUST00000002280, OTTMUST00000053054

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 105 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p3 C57BL/6J

Genomic

  1. NC_000073.6 Reference GRCm38.p3 C57BL/6J

    Range
    24398910..24422777
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006540378.2XP_006540441.1  

  2. XM_006540377.1XP_006540440.1  

    See identical proteins and their annotated locations for XP_006540440.1

    UniProtKB/Swiss-Prot
    Q9DB90
  3. XM_006540379.1XP_006540442.1  

Alternate Mm_Celera

Genomic

  1. AC_000029.1 Alternate Mm_Celera

    Range
    19024019..19047134
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)