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Fam217a family with sequence similarity 217, member A [ Mus musculus (house mouse) ]

Gene ID: 71864, updated on 5-Mar-2024

Summary

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Official Symbol
Fam217aprovided by MGI
Official Full Name
family with sequence similarity 217, member Aprovided by MGI
Primary source
MGI:MGI:1919114
See related
Ensembl:ENSMUSG00000021414 AllianceGenome:MGI:1919114
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
1700026J04Rik
Summary
Orthologous to human FAM217A (family with sequence similarity 217 member A). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Restricted expression toward testis adult (RPKM 34.4) See more
Orthologs
human all
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Genomic context

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Location:
13 A3.3; 13 14.22 cM
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 13 NC_000079.7 (35093942..35108341, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 13 NC_000079.6 (34909959..34924358, complement)

Chromosome 13 - NC_000079.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E7222 Neighboring gene STARR-positive B cell enhancer ABC_E7223 Neighboring gene ribosomal protein S4, X-linked pseudogene Neighboring gene predicted gene, 36839 Neighboring gene pre-mRNA processing factor 4B Neighboring gene STARR-seq mESC enhancer starr_34164 Neighboring gene testis expressed 56 Neighboring gene glyceraldehyde-3-phosphate dehydrogenase pseudogene Neighboring gene enoyl-Coenzyme A delta isomerase 3 Neighboring gene STARR-seq mESC enhancer starr_34165 Neighboring gene predicted gene, 16984

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Genome engineering uncovers 54 evolutionarily conserved and testis-enriched genes that are not required for male fertility in mice. Miyata H, et al. Proc Natl Acad Sci U S A, 2016 Jul 12. PMID 27357688, Free PMC Article
  2. Tissue expression patterns identify mouse cilia genes. McClintock TS, et al. Physiol Genomics, 2008 Jan 17. PMID 17971504
  3. The sperm-associated antigen 6 interactome and its role in spermatogenesis. Liu Y, et al. Reproduction, 2019 Aug. PMID 31146259, Free PMC Article
  4. Database resources of the National Center for Biotechnology Information. Wheeler DL, et al. Nucleic Acids Res, 2001 Jan 1. PMID 11125038, Free PMC Article
  5. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article

See all (12) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
protein FAM217A
Names
uncharacterized protein C6orf146 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_027967.1 → NP_082243.1  protein FAM217A

    Status: VALIDATED

    Source sequence(s)
    AK006388, AK139828
    Consensus CDS
    CCDS56875.1
    UniProtKB/Swiss-Prot
    Q9D9W6
    UniProtKB/TrEMBL
    F8WGE0
    Related
    ENSMUSP00000021851.7, ENSMUST00000021851.8
    Conserved Domains (1) summary
    pfam15344
    Location:206 → 409
    FAM217; FAM217 family

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000079.7 Reference GRCm39 C57BL/6J

    Range
    35093942..35108341 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006516783.3 → XP_006516846.1  protein FAM217A isoform X2

    UniProtKB/TrEMBL
    A0A286YD65, Q3UT29
    Related
    ENSMUSP00000153297.2, ENSMUST00000223834.2
    Conserved Domains (1) summary
    pfam15344
    Location:358 → 561
    FAM217; FAM217 family

  2. XM_006516782.3 → XP_006516845.1  protein FAM217A isoform X1

    UniProtKB/TrEMBL
    Q3UT29
    Conserved Domains (1) summary
    pfam15344
    Location:359 → 562
    FAM217; FAM217 family

  3. XM_006516785.3 → XP_006516848.1  protein FAM217A isoform X4

    Conserved Domains (1) summary
    pfam15344
    Location:266 → 469
    FAM217; FAM217 family

  4. XM_006516784.3 → XP_006516847.1  protein FAM217A isoform X3

    Conserved Domains (1) summary
    pfam15344
    Location:267 → 470
    FAM217; FAM217 family

  5. XM_006516786.5 → XP_006516849.1  protein FAM217A isoform X5

    UniProtKB/Swiss-Prot
    Q9D9W6
    Related
    ENSMUSP00000153128.2, ENSMUST00000225242.2
    Conserved Domains (1) summary
    pfam15344
    Location:207 → 410
    FAM217; FAM217 family

  6. XM_011244351.3 → XP_011242653.1  protein FAM217A isoform X7

  7. XM_011244350.3 → XP_011242652.1  protein FAM217A isoform X6

  8. XM_036158176.1 → XP_036014069.1  protein FAM217A isoform X6

Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9D9W6.1 GenPept UniProtKB/Swiss-Prot:Q9D9W6

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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