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    TPM3 tropomyosin 3 [ Homo sapiens (human) ]

    Gene ID: 7170, updated on 15-Jun-2013
    Official Symbol
    TPM3provided by HGNC
    Official Full Name
    tropomyosin 3provided by HGNC
    Primary source
    HGNC:12012
    Locus tag
    RP11-205M9.1
    See related
    Ensembl:ENSG00000143549; HPRD:01840; MIM:191030; Vega:OTTHUMG00000035853
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    TM3; TM5; TRK; CFTD; NEM1; TM-5; TM30; TM30nm; TPMsk3; hscp30; OK/SW-cl.5
    Summary
    This gene encodes a member of the tropomyosin family of actin-binding proteins. Tropomyosins are dimers of coiled-coil proteins that provide stability to actin filaments and regulate access of other actin-binding proteins. Mutations in this gene result in autosomal dominant nemaline myopathy and other muscle disorders. This locus is involved in translocations with other loci, including anaplastic lymphoma receptor tyrosine kinase (ALK) and neurotrophic tyrosine kinase receptor type 1 (NTRK1), which result in the formation of fusion proteins that act as oncogenes. There are numerous pseudogenes for this gene on different chromosomes. Alternative splicing results in multiple transcript variants. [provided by RefSeq, May 2013]
    Location :
    1q21.2
    Sequence :
    Chromosome: 1; NC_000001.10 (154127780..154164609, complement)
    See TPM3 in Epigenomics, MapViewer

    Chromosome 1 - NC_000001.10Genomic Context describing neighboring genes Neighboring gene nucleoporin 210kDa-like Neighboring gene ribosomal protein S7 pseudogene 2 Neighboring gene microRNA 5698 Neighboring gene microRNA 190b Neighboring gene chromosome 1 open reading frame 189

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Congenital myopathy with fiber type disproportion

    Summary from GeneReviews: Congenital Fiber-Type Disproportion Go to GeneReviews

    Disease Characteristics
    Congenital fiber-type disproportion (CFTD) is usually characterized by hypotonia and mild-to-severe generalized muscle weakness at birth or within the first year of life. Although some individuals remain non-ambulatory throughout life, many eventually develop the ability to walk. In more than 90% of affected individuals, muscle weakness is static or improves; in the remainder it is usually slowly progressive. Mild-to-severe respiratory involvement is seen in approximately 30% of affected individuals; respiratory failure may occur at any age. Ophthalmoplegia, ptosis, and facial and/or bulbar weakness with severe limb/respiratory weakness may predict a poor prognosis. Mild-to-severe feeding difficulties occur in nearly 30% of children. Contractures of the hips, knees, ankles, elbows, and fingers occur in approximately 25% and may be present at birth or occur in older persons with decreased mobility secondary to severe weakness. Spinal deformities including scoliosis, kyphoscoliosis, and lordosis are seen in 25% or more of individuals.
    Diagnosis Testing
    Diagnosis is based on a combination of clinical presentation and morphologic features observed on skeletal muscle histology. The pathologic and clinical manifestations of CFTD overlap with other neuromuscular and non-neuromuscular diseases that must be ruled out prior to making a diagnosis of CFTD. To date, mutations have been identified in six genes: ACTA1 (~6% of individuals with CFTD), MYH7 (unknown), RYR1 (~10%-20%), SEPN1 (rare), TPM2 (rare) and TPM3 (~20%-25% of individuals with CFTD).
    Genetic Counseling
    CFTD is a genetically heterogeneous condition that can be inherited in an autosomal recessive, autosomal dominant, or X-linked manner. To date, all identified cases of ACTA1, MYH7, and TPM2-related CFTD have been caused by autosomal dominant mutations while the SEPN1 and RYR1-related cases have been associated with autosomal recessive mutations. TPM3-related CFTD can be inherited in an autosomal dominant or autosomal recessive manner. ACTA1 and TPM3 mutations are often de novo dominant. A large portion of individuals with CFTD represent simplex cases (i.e., a single occurrence in a family). It can be difficult to determine inheritance pattern in the family of a simplex case when a disease-causing mutation is not identified through testing of known genes. Prenatal testing for pregnancies at risk for CFTD is possible if the disease-causing mutation(s) in a family are known.
    References

    Nemaline myopathy 1

    Summary from GeneReviews: Nemaline Myopathy Go to GeneReviews

    Disease Characteristics
    Nemaline myopathy (referred to in this entry as NM) is characterized by weakness, hypotonia, and depressed or absent deep tendon reflexes. Muscle weakness is usually most severe in the face, the neck flexors, and the proximal limb muscles. Six forms of NM exist, classified by onset and severity of motor and respiratory involvement: Severe congenital (neonatal) (16% of all individuals with NM). Amish NM. Intermediate congenital (20%). Typical congenital (46%) . Childhood-onset (13%). Adult-onset (late-onset) (4%). Considerable overlap occurs among the forms. Significant differences in survival exist between individuals classified as having severe, intermediate, and typical congenital NM. Severe neonatal respiratory disease and the presence of arthrogryposis multiplex congenita are associated with death in the first year of life. Independent ambulation before age 18 months is predictive of survival. Most children with typical congenital NM are eventually able to walk.
    Diagnosis Testing
    Diagnosis is based on clinical findings and the observation of characteristic rod-shaped structures (nemaline bodies) on muscle biopsy stained with Gomori trichrome. Disease-causing mutations have been identified in seven different genes, all of which encode protein components of the muscle thin filament.
    Genetic Counseling
    NM is inherited in an autosomal dominant or autosomal recessive manner. In one series, approximately 20% of cases were autosomal recessive, approximately 30% autosomal dominant, and approximately 50% simplex (i.e., single occurrences in a family) representing heterozygosity for de novo dominant mutations or homozygosity for autosomal recessive mutations. Accurate recurrence risk information requires determination of the mode of inheritance, if possible, through pedigree analysis and a combination of clinical evaluation, molecular genetic testing, and muscle biopsy of the parents. Carrier testing for at-risk relatives in families with autosomal recessive NM is possible if the disease-causing mutations in the family are known. Prenatal molecular genetic testing is possible for pregnancies at increased risk for NM if the disease-causing mutation(s) in the family are known.
    References
    Protein Gene Interaction Pubs
    pol gag-pol Exposure of human skin fibroblasts to HIV-1 protease induces the degradation of the vimentin filament network and the disappearance of the tropomyosin isoforms microfilament network PubMed

    Go to the HIV-1, Human Protein Interaction Database

    Products Interactant Other Gene Complex Source Pubs Description
    P06753 P68133 ACTA1    HPRD  PubMed  
    P06753 P60709 ACTB    HPRD  PubMed  
    P06753 P51911 CNN1    HPRD  PubMed  
    P06753 Chromosome 19 open reading frame 50 KXD1    HPRD  PubMed  
    P06753 P29034 S100A2    HPRD  PubMed  
    P06753 P26447 S100A4    HPRD  PubMed  
    P06753 P84022 SMAD3    HPRD  PubMed  
    P06753 Q6EEV6 SUMO4    HPRD  PubMed  
    P06753 P0C1Z6 TFPT    HPRD  PubMed  
    P06753 P28289 TMOD1    HPRD  PubMed  
    P06753 Q9NZR1 TMOD2    HPRD  PubMed  
    P06753 P06753 TPM3    HPRD  PubMed  
    BioGRID:113023 BioGRID:107140 BRCA1    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:113023 BioGRID:115750 CAP1    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:113023 BioGRID:114392 CDC123    BioGRID  PubMed Co-fractionation 
    BioGRID:113023 BioGRID:107452 CDK2    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:113023 BioGRID:114030 CUL3    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:113023 BioGRID:108290 EIF4A2    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:113023 BioGRID:108309 ELAVL1    BioGRID  PubMed Affinity Capture-RNA 
    BioGRID:113023 BioGRID:108488 FASN    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:113023 BioGRID:117655 FBXO5    BioGRID  PubMed Two-hybrid 
    BioGRID:113023 BioGRID:108578 FKBP4    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:113023 BioGRID:108579 FKBP5    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:113023 BioGRID:108621 FN1    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:113023 BioGRID:109552 HSP90AA1    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:113023 BioGRID:109558 HSP90AB1    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:113023 BioGRID:109547 HSPB1    BioGRID  PubMed Co-fractionation 
    BioGRID:113023 BioGRID:115114 KIAA0101    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:113023 BioGRID:122501 KXD1    BioGRID  PubMed Two-hybrid 
    BioGRID:113023 BioGRID:114454 KYNU    BioGRID  PubMed Co-fractionation 
    BioGRID:113023 BioGRID:125700 LRRK2    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:113023 BioGRID:116121 MAGED2    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:113023 BioGRID:110333 MCC    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:113023 BioGRID:110340 MCM3    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:113023 BioGRID:115014 MDC1    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:113023 BioGRID:115948 MGEA5    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:113023 BioGRID:110826 NEK2    BioGRID  PubMed Two-hybrid 
    BioGRID:113023 BioGRID:115252 PAN2    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:113023 BioGRID:116625 PAXIP1    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:113023 BioGRID:111089 PRDX1    BioGRID  PubMed Co-fractionation 
    BioGRID:113023 BioGRID:111822 RAD21    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:113023 BioGRID:116365 SEC23IP    BioGRID  PubMed Co-fractionation 
    BioGRID:113023 BioGRID:116015 SEPT9    BioGRID  PubMed Co-fractionation 
    BioGRID:113023 BioGRID:113826 SF3A2    BioGRID  PubMed Co-fractionation 
    BioGRID:113023 BioGRID:112550 SP1    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:113023 BioGRID:132223 SUMO4    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:113023 BioGRID:118931 TFPT    BioGRID  PubMed Two-hybrid 
    BioGRID:113023 BioGRID:115305 THOC1    BioGRID  PubMed Co-fractionation 
    BioGRID:113023 BioGRID:113014 TP73    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:113023 BioGRID:113021 TPM1    BioGRID  PubMed Co-fractionation 
    BioGRID:113023 BioGRID:113022 TPM2    BioGRID  PubMed Co-fractionation 
    BioGRID:113023 BioGRID:113023 TPM3    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:113023 BioGRID:113024 TPM4    BioGRID  PubMed Co-fractionation 
    BioGRID:113023 BioGRID:115435 TRAP1    BioGRID  PubMed Two-hybrid 
    BioGRID:113023 BioGRID:113164 UBC    BioGRID  PubMed Affinity Capture-MS 
    • Cardiac muscle contraction, organism-specific biosystem (from KEGG)
      Cardiac muscle contraction, organism-specific biosystemContraction of the heart is a complex process initiated by the electrical excitation of cardiac myocytes (excitation-contraction coupling, ECC). In cardiac myocytes, Ca2+ influx induced by activation...
    • Cardiac muscle contraction, conserved biosystem (from KEGG)
      Cardiac muscle contraction, conserved biosystemContraction of the heart is a complex process initiated by the electrical excitation of cardiac myocytes (excitation-contraction coupling, ECC). In cardiac myocytes, Ca2+ influx induced by activation...
    • Dilated cardiomyopathy, organism-specific biosystem (from KEGG)
      Dilated cardiomyopathy, organism-specific biosystemDilated cardiomyopathy (DCM) is a heart muscle disease characterised by dilation and impaired contraction of the left or both ventricles that results in progressive heart failure and sudden cardiac d...
    • Dilated cardiomyopathy, conserved biosystem (from KEGG)
      Dilated cardiomyopathy, conserved biosystemDilated cardiomyopathy (DCM) is a heart muscle disease characterised by dilation and impaired contraction of the left or both ventricles that results in progressive heart failure and sudden cardiac d...
    • Hypertrophic cardiomyopathy (HCM), organism-specific biosystem (from KEGG)
      Hypertrophic cardiomyopathy (HCM), organism-specific biosystemHypertrophic cardiomyopathy (HCM) is a primary myocardial disorder with an autosomal dominant pattern of inheritance that is characterized by hypertrophy of the left ventricles with histological feat...
    • Hypertrophic cardiomyopathy (HCM), conserved biosystem (from KEGG)
      Hypertrophic cardiomyopathy (HCM), conserved biosystemHypertrophic cardiomyopathy (HCM) is a primary myocardial disorder with an autosomal dominant pattern of inheritance that is characterized by hypertrophy of the left ventricles with histological feat...
    • Muscle contraction, organism-specific biosystem (from REACTOME)
      Muscle contraction, organism-specific biosystemIn this module, the processes by which calcium binding triggers actin - myosin interactions and force generation in smooth and striated muscle tissues are annotated.
    • Pathways in cancer, organism-specific biosystem (from KEGG)
      Pathways in cancer, organism-specific biosystem
      Pathways in cancer
    • Smooth Muscle Contraction, organism-specific biosystem (from REACTOME)
      Smooth Muscle Contraction, organism-specific biosystemLayers of smooth muscle cells can be found in the walls of numerous organs and tissues within the body. Smooth muscle tissue lacks the striated banding pattern characteristic of skeletal and cardiac ...
    • Striated Muscle Contraction, organism-specific biosystem (from WikiPathways)
      Striated Muscle Contraction, organism-specific biosystemMuscle contraction is the process where muscle tissue is activated by a signal from the nervous system. In case of voluntary action the nervous signals are initiated from the brain by so called actio...
    • Striated Muscle Contraction, organism-specific biosystem (from REACTOME)
      Striated Muscle Contraction, organism-specific biosystemStriated muscle contraction is a process whereby force is generated within striated muscle tissue, resulting in a change in muscle geometry, or in short, increased force being exerted on the tendons....
    • Thyroid cancer, organism-specific biosystem (from KEGG)
      Thyroid cancer, organism-specific biosystemThyroid cancer is the most common endocrine malignancy and accounts for the majority of endocrine cancer- related deaths each year. More than 95% of thyroid carcinomas are derived from follicular cel...
    • Thyroid cancer, conserved biosystem (from KEGG)
      Thyroid cancer, conserved biosystemThyroid cancer is the most common endocrine malignancy and accounts for the majority of endocrine cancer- related deaths each year. More than 95% of thyroid carcinomas are derived from follicular cel...

    Markers

    Homology

    Clone Names

    • MGC3261, FLJ41118, MGC14582, MGC72094

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    actin binding IEA
    Inferred from Electronic Annotation
    more info
     
    molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    cellular component movement TAS
    Traceable Author Statement
    more info
    PubMed 
    muscle contraction TAS
    Traceable Author Statement
    more info
     
    muscle filament sliding TAS
    Traceable Author Statement
    more info
     
    regulation of muscle contraction NAS
    Non-traceable Author Statement
    more info
     
    Component Evidence Code Pubs
    actin cytoskeleton IDA
    Inferred from Direct Assay
    more info
     
    cleavage furrow IEA
    Inferred from Electronic Annotation
    more info
     
    cortical cytoskeleton IEA
    Inferred from Electronic Annotation
    more info
     
    cytoplasm IDA
    Inferred from Direct Assay
    more info
     
    cytoskeleton NAS
    Non-traceable Author Statement
    more info
    PubMed 
    cytoskeleton TAS
    Traceable Author Statement
    more info
    PubMed 
    cytosol TAS
    Traceable Author Statement
    more info
     
    filamentous actin IEA
    Inferred from Electronic Annotation
    more info
     
    growth cone IEA
    Inferred from Electronic Annotation
    more info
     
    muscle thin filament tropomyosin TAS
    Traceable Author Statement
    more info
    PubMed 
    podosome IEA
    Inferred from Electronic Annotation
    more info
     
    stress fiber IDA
    Inferred from Direct Assay
    more info
    PubMed 
    Preferred Names
    tropomyosin alpha-3 chain
    Names
    tropomyosin alpha-3 chain
    tropomyosin-5
    tropomyosin gamma
    cytoskeletal tropomyosin TM30
    alpha-tropomyosin, slow skeletal
    heat-stable cytoskeletal protein 30 kDa

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_008621.1 RefSeqGene

      Range
      4999..41830
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001043351.1NP_001036816.1  tropomyosin alpha-3 chain isoform 4

      Status: REVIEWED

      Description
      Transcript Variant: This variant (4) lacks an exon and contains an alternate exon in the central coding region, but maintains the reading frame, compared to variant 2. The encoded isoform (4, also known as Tm5NM2) is the same length as isoform 2 but differs in the sequence.
      Source sequence(s)
      AA863064, AL537561, AL590431, BC000771, DA472065
      Consensus CDS
      CCDS41400.1
      UniProtKB/Swiss-Prot
      P06753
      UniProtKB/TrEMBL
      Q5VU66
      Conserved Domains (1) summary
      pfam00261
      Location:12248
      Blast Score: 403
      Tropomyosin; Tropomyosin
    2. NM_001043352.1NP_001036817.1  tropomyosin alpha-3 chain isoform 3

      Status: REVIEWED

      Description
      Transcript Variant: This variant (3) uses an alternate splice site in the 3' coding region, compared to variant 2. The encoded isoform (3, also known as Tm5NM7 or TC22), is shorter and has a distinct C-terminus, compared to isoform 2.
      Source sequence(s)
      AA863064, AK123113, AL590431, AY004867, BM674269, DA472065
      Consensus CDS
      CCDS41402.1
      UniProtKB/Swiss-Prot
      P06753
      Conserved Domains (1) summary
      pfam00261
      Location:12245
      Blast Score: 423
      Tropomyosin; Tropomyosin
    3. NM_001043353.1NP_001036818.1  tropomyosin alpha-3 chain isoform 5

      Status: REVIEWED

      Description
      Transcript Variant: This variant (5) lacks an exon and contains an alternate exon in the central coding region, and uses an alternate splice site in the 3' coding region, compared to variant 2. The encoded isoform (5, also known as Tm5NM4) is shorter and has a distinct C-terminus, compared to isoform 2.
      Source sequence(s)
      AA863064, AK123113, AL590431, BG706843, BI546300, BM674269, BX419658, DA472065
      Consensus CDS
      CCDS41401.1
      UniProtKB/TrEMBL
      Q5VU72
      Conserved Domains (1) summary
      pfam00261
      Location:12245
      Blast Score: 404
      Tropomyosin; Tropomyosin
    4. NM_001278188.1NP_001265117.1  tropomyosin alpha-3 chain isoform 6

      Status: REVIEWED

      Description
      Transcript Variant: This variant (6) lacks an exon in the 5' coding region, compared to variant 2, and initiates translation at an alternate upstream start codon. The encoded isoform (6) is shorter and has a distinct N-terminus, compared to isoform 2.
      Source sequence(s)
      AA863064, AK298678, AL590431, DA472065
      Conserved Domains (1) summary
      pfam00261
      Location:22182
      Blast Score: 376
      Tropomyosin; Tropomyosin
    5. NM_001278189.1NP_001265118.1  tropomyosin alpha-3 chain isoform 7

      Status: REVIEWED

      Description
      Transcript Variant: This variant (7) contains an alternate exon in the 3' coding region, which results in a frameshift, compared to variant 2. The encoded isoform (7, also known as Tm5NM5) is the same length as isoform 2 but has a distinct C-terminus.
      Source sequence(s)
      AA863064, AF474157, AL590431, CR997359, DA472065
      Conserved Domains (1) summary
      pfam00261
      Location:12248
      Blast Score: 452
      Tropomyosin; Tropomyosin
    6. NM_001278190.1NP_001265119.1  tropomyosin alpha-3 chain isoform 8

      Status: REVIEWED

      Description
      Transcript Variant: This variant (8) lacks an alternate exon in the central coding region, but maintains the reading frame, compared to variant 2. The encoded isoform (8) is shorter than isoform 2.
      Source sequence(s)
      AA863064, AL590431, BQ933569, DA472065
      Conserved Domains (1) summary
      pfam00261
      Location:12227
      Blast Score: 336
      Tropomyosin; Tropomyosin
    7. NM_001278191.1NP_001265120.1  tropomyosin alpha-3 chain isoform 9

      Status: REVIEWED

      Description
      Transcript Variant: This variant (9) differs in the 5' UTR and contains multiple differences in the coding region, compared to variant 2. It initiates translation at a downstream in-frame start codon. The encoded isoform (9) is shorter than isoform 2.
      Source sequence(s)
      AA863064, AL590431, BC000771, BF967161, DA209890
      Conserved Domains (1) summary
      pfam00261
      Location:1158
      Blast Score: 329
      Tropomyosin; Tropomyosin
    8. NM_152263.3NP_689476.2  tropomyosin alpha-3 chain isoform 1

      Status: REVIEWED

      Description
      Transcript Variant: This variant (1) differs in the 5' and 3' UTRs and contains multiple differences in the coding region, compared to variant 2. It represents use of an alternate promoter and initiates translation at an alternate start codon. The encoded isoform (1, also known as alpha s Tm) is longer and has distinct N- and C- termini, compared to isoform 1.
      Source sequence(s)
      AJ573307, AL590431, BC008425, BC050470, DA900740
      Consensus CDS
      CCDS41403.1
      UniProtKB/Swiss-Prot
      P06753
      Conserved Domains (1) summary
      pfam00261
      Location:49285
      Blast Score: 426
      Tropomyosin; Tropomyosin
    9. NM_153649.3NP_705935.1  tropomyosin alpha-3 chain isoform 2

      Status: REVIEWED

      Description
      Transcript Variant: This variant (2) encodes isoform 2 (also known as Tm5NM1, TM-5, or TM30nm).
      Source sequence(s)
      AA863064, AL590431, BC000771, DA472065
      Consensus CDS
      CCDS1060.1
      UniProtKB/Swiss-Prot
      P06753
      Related
      ENSP00000357521, OTTHUMP00000034019, ENST00000368533, OTTHUMT00000087274
      Conserved Domains (1) summary
      pfam00261
      Location:12248
      Blast Score: 423
      Tropomyosin; Tropomyosin

    RNA

    1. NR_103460.1 RNA Sequence

      Status: REVIEWED

      Description
      Transcript Variant: This variant (11) represents use of an alternate promoter and does not share any exons with variant 2, but shares exons with variant 1. This variant is represented as non-coding because use of the 5'-most translational start codon, as used in variant 1, renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
      Source sequence(s)
      AA429717, BC008425, BM674651, DA900740
    2. NR_103461.1 RNA Sequence

      Status: REVIEWED

      Description
      Transcript Variant: This variant (10) uses an alternate splice site at an internal exon, compared to variant 2. This variant is represented as non-coding because use of the 5'-most translational start codon, as used in variant 2, renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
      Source sequence(s)
      AA863064, AL590431, BC000771, BU956481, DA472065

    RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 104

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh37.p10 Primary Assembly

    Genomic

    1. NC_000001.10 Reference GRCh37.p10 Primary Assembly

      Range
      154127780..154164609, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate HuRef

    Genomic

    1. AC_000133.1 Alternate HuRef

      Range
      125491124..125527937, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate CHM1_1.0

    Genomic

    1. NC_018912.1 Alternate CHM1_1.0

      Range
      160629743..160666742, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

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