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    sodB superoxide dismutase [ Escherichia coli IAI39 ]

    Gene ID: 7153582, updated on 27-Nov-2012
    Gene symbol
    sodB
    Gene description
    superoxide dismutase
    Locus tag
    ECIAI39_1400
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli IAI39 (strain: IAI39)
    Lineage
    Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia
    Sequence :
    NC_011750.1 (1471273..1471854, complement)

    NC_011750.1Genomic Context describing neighboring genes Neighboring gene putative DNA-binding transcriptional regulator Neighboring gene DNA-binding transcriptional repressor PurR Neighboring gene putative efflux protein; MFS family Neighboring gene putative exported hydrolase Neighboring gene hypothetical protein

    Go to nucleotideGraphics FASTA GenBank

    Go to reference sequence details

    Related articles in PubMed

    1. Organised genome dynamics in the Escherichia coli species results in highly diverse adaptive paths. Touchon M, et al. PLoS Genet, 2009 Jan. PMID 19165319.

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Submit: New GeneRIF Correction
    Names
    superoxide dismutase
    YP_002407405.1
    • SodB; iron binding; present under aerobic and anaerobic conditions; destroys free radicals

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_011750.1

      Range
      1471273..1471854, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. YP_002407405.1 superoxide dismutase [Escherichia coli IAI39]

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      B7NTX7
      Conserved Domains (3) summary
      PRK10543
      Location:1 – 193
      Blast Score: 889
      PRK10543; superoxide dismutase; Provisional
      pfam00081
      Location:2 – 82
      Blast Score: 343
      Sod_Fe_N; Iron/manganese superoxide dismutases, alpha-hairpin domain
      pfam02777
      Location:87 – 191
      Blast Score: 377
      Sod_Fe_C; Iron/manganese superoxide dismutases, C-terminal domain
    Nucleotide Protein
    Heading Accession and Version
    genomic CU928164.2 CAR17533.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases

      Supplemental Content

      Table of contents

      Related information

      • BioProjects
        BioProjects related to a gene
      • Conserved Domains
        Conserved Domain Database Links between Entrez Gene and Conserved Domain Database (CDD) are calculated from the domains annotated by the CDD group on Reference Sequence proteins.
      • Full text in PMC
        PMC links
      • Full text in PMC_nucleotide
        Full text in PubMedCentral identified from shared sequence links
      • Genome
        Genome records having the gene annotated on corresponding genomic reference sequence.
      • Nucleotide
        Link to related Nucleotide entry
      • Protein
        Link to related protein entry
      • Protein Clusters
        Related Protein Clusters
      • PubMed
        Links between Gene and PubMed are the result of the following: 1. Manual curation within NCBI. Part of the process of generating a REVIEWED RefSeq is an analysis of the current literature. Papers that are seminal in defining the gene, its sequence, and its function are added to the record at that time. Alert users point out gaps or errors in papers associated with a Gene record. These messages are reviewed and implemented as required. 2. Integration of information from other public databases. Gene integrates gene-citation from resources external to NCBI such as model organism-specific databases, Gene Ontology (GO), groups curating interactions, and sequence databases. The assumption in using these source is that they report citations specific to a gene in a known species. Gene does not process citations from OMIM automatically, because many of citations in OMIM refer to studies of genes in species other than human.
      • PubMed(nucleotide/PMC)
        Citations in PubMed identified from shared sequence and PMC links.
      • RefSeq Proteins
        Link to Protein RefSeqs
      • Taxonomy
        Link to related taxonomy entry

      Links to other resources

      General information

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