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TIAL1 TIA1 cytotoxic granule-associated RNA binding protein-like 1 [ Homo sapiens (human) ]

Gene ID: 7073, updated on 18-Aug-2014
Official Symbol
TIAL1provided by HGNC
Official Full Name
TIA1 cytotoxic granule-associated RNA binding protein-like 1provided by HGNC
Primary source
HGNC:11804
See related
HPRD:04563; MIM:603413
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
TCBP; TIAR
Summary
The protein encoded by this gene is a member of a family of RNA-binding proteins, has three RNA recognition motifs (RRMs), and binds adenine and uridine-rich elements in mRNA and pre-mRNAs of a wide range of genes. It regulates various activities including translational control, splicing and apoptosis. Alternate transcriptional splice variants, encoding different isoforms, have been characterized. The different isoforms have been show to function differently with respect to post-transcriptional silencing. [provided by RefSeq, Jul 2008]
See TIAL1 in Epigenomics, MapViewer
Location:
10q
Exon count:
15
Annotation release Status Assembly Chr Location
106 current GRCh38 (GCF_000001405.26) 10 NC_000010.11 (119573465..119597029, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 10 NC_000010.10 (121332977..121356541, complement)

Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene G protein-coupled receptor kinase 5 Neighboring gene microRNA 4681 Neighboring gene regulator of G-protein signaling 10 Neighboring gene RAD1 pseudogene 1 Neighboring gene ribosomal protein S8 pseudogene 4

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Products Interactant Other Gene Complex Source Pubs Description

Markers

Homology

Clone Names

  • MGC33401

Gene Ontology Provided by GOA

Function Evidence Code Pubs
AU-rich element binding IEA
Inferred from Electronic Annotation
more info
 
RNA binding TAS
Traceable Author Statement
more info
PubMed 
nucleotide binding IEA
Inferred from Electronic Annotation
more info
 
poly(A) RNA binding IDA
Inferred from Direct Assay
more info
 
Process Evidence Code Pubs
apoptotic process IEA
Inferred from Electronic Annotation
more info
 
defense response TAS
Traceable Author Statement
more info
PubMed 
germ cell development IEA
Inferred from Electronic Annotation
more info
 
positive regulation of cell proliferation IEA
Inferred from Electronic Annotation
more info
 
regulation of transcription from RNA polymerase II promoter TAS
Traceable Author Statement
more info
PubMed 
stem cell division IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
cytoplasm ISS
Inferred from Sequence or Structural Similarity
more info
 
cytoplasmic stress granule ISS
Inferred from Sequence or Structural Similarity
more info
 
extracellular vesicular exosome IDA
Inferred from Direct Assay
more info
 
lysosome TAS
Traceable Author Statement
more info
PubMed 
nucleus ISS
Inferred from Sequence or Structural Similarity
more info
 
Preferred Names
nucleolysin TIAR
Names
nucleolysin TIAR
T-cluster binding protein
TIA-1-related nucleolysin
aging-associated gene 7 protein

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_029240.1 

    Range
    5001..28565
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001033925.1NP_001029097.1  nucleolysin TIAR isoform 2

    See proteins identical to NP_001029097.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (2) uses an alternate in-frame splice site in the coding region, compared to variant 1, resulting in a longer protein (isoform 2).
    Source sequence(s)
    AA972022, AC012468, AK125264, BC030025, M96954
    Consensus CDS
    CCDS31295.1
    UniProtKB/Swiss-Prot
    Q01085
    UniProtKB/TrEMBL
    Q49AS9
    Conserved Domains (4) summary
    COG0724
    Location:8284
    Blast Score: 264
    COG0724; RNA-binding proteins (RRM domain) [General function prediction only]
    cd12617
    Location:113192
    Blast Score: 418
    RRM2_TIAR; RNA recognition motif 2 in nucleolysin TIAR and similar proteins
    cd12620
    Location:222294
    Blast Score: 397
    RRM3_TIAR; RNA recognition motif 3 in nucleolysin TIAR and similar proteins
    cl17169
    Location:10107
    Blast Score: 373
    RRM_SF; RNA recognition motif (RRM) superfamily
  2. NM_003252.3NP_003243.1  nucleolysin TIAR isoform 1

    See proteins identical to NP_003243.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (1) represents the shorter transcript and encodes the shorter isoform (1).
    Source sequence(s)
    AA972022, AC012468, AK125264, AL833106, BC030025
    Consensus CDS
    CCDS7613.1
    UniProtKB/Swiss-Prot
    Q01085
    UniProtKB/TrEMBL
    Q49AS9
    Conserved Domains (4) summary
    TIGR01661
    Location:7271
    Blast Score: 268
    ELAV_HUD_SF; ELAV/HuD family splicing factor
    cd12616
    Location:1090
    Blast Score: 401
    RRM1_TIAR; RNA recognition motif 1 in nucleolysin TIAR and similar proteins
    cd12617
    Location:96175
    Blast Score: 418
    RRM2_TIAR; RNA recognition motif 2 in nucleolysin TIAR and similar proteins
    cd12620
    Location:205277
    Blast Score: 396
    RRM3_TIAR; RNA recognition motif 3 in nucleolysin TIAR and similar proteins

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 106

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38 Primary Assembly

Genomic

  1. NC_000010.11 

    Range
    119573465..119597029
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005270109.1XP_005270166.1  

    See proteins identical to XP_005270166.1

    UniProtKB/TrEMBL
    Q49AS9
    Conserved Domains (2) summary
    cd12620
    Location:82154
    Blast Score: 391
    RRM3_TIAR; RNA recognition motif 3 in nucleolysin TIAR and similar proteins
    cl17169
    Location:252
    Blast Score: 268
    RRM_SF; RNA recognition motif (RRM) superfamily
  2. XM_005270108.1XP_005270165.1  

    See proteins identical to XP_005270165.1

    Conserved Domains (3) summary
    cd12617
    Location:74153
    Blast Score: 413
    RRM2_TIAR; RNA recognition motif 2 in nucleolysin TIAR and similar proteins
    cd12620
    Location:183255
    Blast Score: 395
    RRM3_TIAR; RNA recognition motif 3 in nucleolysin TIAR and similar proteins
    cl17169
    Location:1968
    Blast Score: 226
    RRM_SF; RNA recognition motif (RRM) superfamily
  3. XM_005270110.2XP_005270167.1  

    See proteins identical to XP_005270167.1

    UniProtKB/TrEMBL
    Q49AS9
    Conserved Domains (2) summary
    cd12620
    Location:82154
    Blast Score: 391
    RRM3_TIAR; RNA recognition motif 3 in nucleolysin TIAR and similar proteins
    cl17169
    Location:252
    Blast Score: 268
    RRM_SF; RNA recognition motif (RRM) superfamily
  4. XM_006717959.1XP_006718022.1  

    See proteins identical to XP_006718022.1

    Conserved Domains (4) summary
    TIGR01661
    Location:7288
    Blast Score: 258
    ELAV_HUD_SF; ELAV/HuD family splicing factor
    cd12617
    Location:113192
    Blast Score: 427
    RRM2_TIAR; RNA recognition motif 2 in nucleolysin TIAR and similar proteins
    cd12620
    Location:222294
    Blast Score: 402
    RRM3_TIAR; RNA recognition motif 3 in nucleolysin TIAR and similar proteins
    cl17169
    Location:10107
    Blast Score: 371
    RRM_SF; RNA recognition motif (RRM) superfamily

RNA

  1. XR_428715.1 RNA Sequence

Alternate HuRef

Genomic

  1. AC_000142.1 

    Range
    114962544..114986092
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate CHM1_1.1

Genomic

  1. NC_018921.2 

    Range
    121617558..121641117
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)