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Vps36 vacuolar protein sorting 36 [ Mus musculus (house mouse) ]

Gene ID: 70160, updated on 8-May-2016
Official Symbol
Vps36provided by MGI
Official Full Name
vacuolar protein sorting 36provided by MGI
Primary source
MGI:MGI:1917410
See related
Ensembl:ENSMUSG00000031479
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Eap45; 1700010A24Rik; 2210415M20Rik; 2810408E15Rik
Orthologs
Location:
8; 8 A3
Exon count:
14
Annotation release Status Assembly Chr Location
105 current GRCm38.p3 (GCF_000001635.23) 8 NC_000074.6 (22192860..22218597)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 8 NC_000074.5 (23303332..23329069)

Chromosome 8 - NC_000074.6Genomic Context describing neighboring genes Neighboring gene cytoskeleton associated protein 2 Neighboring gene predicted gene, 29878 Neighboring gene ribosomal protein L30, pseudogene 2 Neighboring gene thrombospondin, type I, domain 1 Neighboring gene transmembrane phosphatase with tensin homology

Products Interactant Other Gene Complex Source Pubs Description

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
lipid binding IEA
Inferred from Electronic Annotation
more info
 
phosphatidylinositol-3-phosphate binding IEA
Inferred from Electronic Annotation
more info
 
protein C-terminus binding ISO
Inferred from Sequence Orthology
more info
 
ubiquitin binding IDA
Inferred from Direct Assay
more info
PubMed 
ubiquitin binding ISO
Inferred from Sequence Orthology
more info
 
Process Evidence Code Pubs
endosomal transport IC
Inferred by Curator
more info
PubMed 
protein targeting to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway IBA
Inferred from Biological aspect of Ancestor
more info
 
protein transport IEA
Inferred from Electronic Annotation
more info
 
regulation of transcription, DNA-templated IEA
Inferred from Electronic Annotation
more info
 
transcription, DNA-templated IEA
Inferred from Electronic Annotation
more info
 
transport IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
ESCRT II complex IBA
Inferred from Biological aspect of Ancestor
more info
 
cytoplasm IEA
Inferred from Electronic Annotation
more info
 
cytosol ISO
Inferred from Sequence Orthology
more info
 
endosome ISO
Inferred from Sequence Orthology
more info
 
extracellular exosome ISO
Inferred from Sequence Orthology
more info
 
late endosome IDA
Inferred from Direct Assay
more info
PubMed 
late endosome membrane IBA
Inferred from Biological aspect of Ancestor
more info
 
late endosome membrane ISO
Inferred from Sequence Orthology
more info
 
lysosome IDA
Inferred from Direct Assay
more info
PubMed 
membrane IEA
Inferred from Electronic Annotation
more info
 
nucleus IEA
Inferred from Electronic Annotation
more info
 
Preferred Names
vacuolar protein-sorting-associated protein 36
Names
ESCRT-II complex subunit VPS36

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_027338.1NP_081614.1  vacuolar protein-sorting-associated protein 36

    See identical proteins and their annotated locations for NP_081614.1

    Status: PROVISIONAL

    Source sequence(s)
    BC010811
    Consensus CDS
    CCDS22171.1
    UniProtKB/Swiss-Prot
    Q91XD6
    UniProtKB/TrEMBL
    Q3TSR1
    Related
    ENSMUSP00000033866, OTTMUSP00000033688, ENSMUST00000033866, OTTMUST00000067067
    Conserved Domains (2) summary
    pfam04157
    Location:154369
    EAP30; EAP30/Vps36 family
    cd13226
    Location:1128
    PH-GRAM-like_Eap45; Pleckstrin homology-like domain or GLUE (GRAM-like ubiquitin-binding in Eap45) domain of Eap45

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 105 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p3 C57BL/6J

Genomic

  1. NC_000074.6 Reference GRCm38.p3 C57BL/6J

    Range
    22192860..22218597
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate Mm_Celera

Genomic

  1. AC_000030.1 Alternate Mm_Celera

    Range
    23685519..23711451
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)