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SGMS2 sphingomyelin synthase 2 [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 695947, updated on 5-Mar-2024

Summary

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Official Symbol
SGMS2provided by VGNC
Official Full Name
sphingomyelin synthase 2provided by VGNC
Primary source
VGNC:VGNC:77320
Locus tag
EGK_15995
See related
Ensembl:ENSMMUG00000017834
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 5
Exon count:
11
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 5 NC_041758.1 (106191144..106282300)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 5 NC_027897.1 (106721807..106815476)

Chromosome 5 - NC_041758.1Genomic Context describing neighboring genes Neighboring gene 3'-phosphoadenosine 5'-phosphosulfate synthase 1 Neighboring gene uncharacterized LOC114678171 Neighboring gene uncharacterized LOC106998458 Neighboring gene U6 spliceosomal RNA Neighboring gene uncharacterized LOC114678375 Neighboring gene cytochrome P450 family 2 subfamily U member 1 Neighboring gene 60S ribosomal protein L37 pseudogene Neighboring gene hydroxyacyl-CoA dehydrogenase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques. Yan G, et al. Nat Biotechnol, 2011 Oct 16. PMID 22002653
  2. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ceramide cholinephosphotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sphingomyelin synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ceramide biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sphingomyelin biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
phosphatidylcholine:ceramide cholinephosphotransferase 2
NP_001180669.1
XP_002804211.1
XP_002804212.1
XP_014994434.1
XP_014994435.1
XP_014994440.1
XP_028703807.1
XP_028703808.1
XP_028703809.1
XP_028703810.1
XP_028703811.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001193740.2 → NP_001180669.1  phosphatidylcholine:ceramide cholinephosphotransferase 2

    See identical proteins and their annotated locations for NP_001180669.1

    Status: PROVISIONAL

    Source sequence(s)
    QNVO02000368
    UniProtKB/TrEMBL
    A0A8J8YDE5, F7DR07, F7ESD1, G7MTL0
    Related
    ENSMMUP00000064324.1, ENSMMUT00000103881.1
    Conserved Domains (1) summary
    pfam14360
    Location:220 → 293
    PAP2_C; PAP2 superfamily C-terminal

RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041758.1 Reference Mmul_10 Primary Assembly

    Range
    106191144..106282300
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015138948.2 → XP_014994434.1  phosphatidylcholine:ceramide cholinephosphotransferase 2 isoform X1

    UniProtKB/TrEMBL
    A0A8J8YDE5, F7DR07, F7ESD1, G7MTL0
    Conserved Domains (1) summary
    pfam14360
    Location:220 → 293
    PAP2_C; PAP2 superfamily C-terminal

  2. XM_015138954.2 → XP_014994440.1  phosphatidylcholine:ceramide cholinephosphotransferase 2 isoform X1

    UniProtKB/TrEMBL
    A0A8J8YDE5, F7DR07, F7ESD1, G7MTL0
    Related
    ENSMMUP00000072382.1, ENSMMUT00000096919.1
    Conserved Domains (1) summary
    pfam14360
    Location:220 → 293
    PAP2_C; PAP2 superfamily C-terminal

  3. XM_028847975.1 → XP_028703808.1  phosphatidylcholine:ceramide cholinephosphotransferase 2 isoform X1

    UniProtKB/TrEMBL
    A0A8J8YDE5, F7DR07, F7ESD1, G7MTL0
    Conserved Domains (1) summary
    pfam14360
    Location:220 → 293
    PAP2_C; PAP2 superfamily C-terminal

  4. XM_028847976.1 → XP_028703809.1  phosphatidylcholine:ceramide cholinephosphotransferase 2 isoform X1

    UniProtKB/TrEMBL
    A0A8J8YDE5, F7DR07, F7ESD1, G7MTL0
    Conserved Domains (1) summary
    pfam14360
    Location:220 → 293
    PAP2_C; PAP2 superfamily C-terminal

  5. XM_028847978.1 → XP_028703811.1  phosphatidylcholine:ceramide cholinephosphotransferase 2 isoform X1

    UniProtKB/TrEMBL
    A0A8J8YDE5, F7DR07, F7ESD1, G7MTL0
    Conserved Domains (1) summary
    pfam14360
    Location:220 → 293
    PAP2_C; PAP2 superfamily C-terminal

  6. XM_028847974.1 → XP_028703807.1  phosphatidylcholine:ceramide cholinephosphotransferase 2 isoform X1

    UniProtKB/TrEMBL
    A0A8J8YDE5, F7DR07, F7ESD1, G7MTL0
    Conserved Domains (1) summary
    pfam14360
    Location:220 → 293
    PAP2_C; PAP2 superfamily C-terminal

  7. XM_028847977.1 → XP_028703810.1  phosphatidylcholine:ceramide cholinephosphotransferase 2 isoform X1

    UniProtKB/TrEMBL
    A0A8J8YDE5, F7DR07, F7ESD1, G7MTL0
    Conserved Domains (1) summary
    pfam14360
    Location:220 → 293
    PAP2_C; PAP2 superfamily C-terminal

  8. XM_015138949.2 → XP_014994435.1  phosphatidylcholine:ceramide cholinephosphotransferase 2 isoform X1

    UniProtKB/TrEMBL
    A0A8J8YDE5, F7DR07, F7ESD1, G7MTL0
    Related
    ENSMMUP00000071529.1, ENSMMUT00000103213.1
    Conserved Domains (1) summary
    pfam14360
    Location:220 → 293
    PAP2_C; PAP2 superfamily C-terminal

  9. XM_002804166.3 → XP_002804212.1  phosphatidylcholine:ceramide cholinephosphotransferase 2 isoform X1

    See identical proteins and their annotated locations for XP_002804212.1

    UniProtKB/TrEMBL
    A0A8J8YDE5, F7DR07, F7ESD1, G7MTL0
    Conserved Domains (1) summary
    pfam14360
    Location:220 → 293
    PAP2_C; PAP2 superfamily C-terminal

  10. XM_002804165.3 → XP_002804211.1  phosphatidylcholine:ceramide cholinephosphotransferase 2 isoform X1

    See identical proteins and their annotated locations for XP_002804211.1

    UniProtKB/TrEMBL
    A0A8J8YDE5, F7DR07, F7ESD1, G7MTL0
    Conserved Domains (1) summary
    pfam14360
    Location:220 → 293
    PAP2_C; PAP2 superfamily C-terminal
Nucleotide Protein
Heading Accession and Version

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