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    truB tRNA pseudouridine synthase B [ Klebsiella pneumoniae 342 ]

    Gene ID: 6934920, updated on 18-May-2013
    Gene symbol
    truB
    Gene description
    tRNA pseudouridine synthase B
    Locus tag
    KPK_0548
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Klebsiella pneumoniae 342 (strain: 342, old-name: Klebsiella pneumoniae)
    Lineage
    Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Klebsiella
    Sequence :
    NC_011283.1 (563424..564368)

    NC_011283.1Genomic Context describing neighboring genes Neighboring gene transcription elongation factor NusA Neighboring gene translation initiation factor IF-2 Neighboring gene ribosome-binding factor A Neighboring gene hypothetical protein Neighboring gene 30S ribosomal protein S15 Neighboring gene polynucleotide phosphorylase/polyadenylase

    Go to nucleotideGraphics FASTA GenBank

    Go to reference sequence details

    Related articles in PubMed

    1. Complete genome sequence of the N2-fixing broad host range endophyte Klebsiella pneumoniae 342 and virulence predictions verified in mice. Fouts DE, et al. PLoS Genet, 2008 Jul 25. PMID 18654632.

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Submit: New GeneRIF Correction
    Names
    tRNA pseudouridine synthase B
    YP_002236423.1
    • catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_011283.1

      Range
      563424..564368
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. YP_002236423.1 tRNA pseudouridine synthase B [Klebsiella pneumoniae 342]

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      B5XSX6
      Conserved Domains (3) summary
      cd02573
      Location:13 – 217
      Blast Score: 876
      PseudoU_synth_EcTruB; Pseudouridine synthase, Escherichia coli TruB like
      pfam09157
      Location:252 – 309
      Blast Score: 187
      TruB-C_2; Pseudouridine synthase II TruB, C-terminal
      PRK05033
      Location:3 – 314
      Blast Score: 1490
      truB; tRNA pseudouridine synthase B; Provisional
    Nucleotide Protein
    Heading Accession and Version
    genomic CP000964.1 ACI10808.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases

      Supplemental Content

      Table of contents

      Related information

      • BioProjects
        BioProjects related to a gene
      • Conserved Domains
        Conserved Domain Database Links between Entrez Gene and Conserved Domain Database (CDD) are calculated from the domains annotated by the CDD group on Reference Sequence proteins.
      • Full text in PMC
        PMC links
      • Full text in PMC_nucleotide
        Full text in PubMedCentral identified from shared sequence links
      • Genome
        Genome records having the gene annotated on corresponding genomic reference sequence.
      • Nucleotide
        Link to related Nucleotide entry
      • Protein
        Link to related protein entry
      • Protein Clusters
        Related Protein Clusters
      • PubMed
        Links between Gene and PubMed are the result of the following: 1. Manual curation within NCBI. Part of the process of generating a REVIEWED RefSeq is an analysis of the current literature. Papers that are seminal in defining the gene, its sequence, and its function are added to the record at that time. Alert users point out gaps or errors in papers associated with a Gene record. These messages are reviewed and implemented as required. 2. Integration of information from other public databases. Gene integrates gene-citation from resources external to NCBI such as model organism-specific databases, Gene Ontology (GO), groups curating interactions, and sequence databases. The assumption in using these source is that they report citations specific to a gene in a known species. Gene does not process citations from OMIM automatically, because many of citations in OMIM refer to studies of genes in species other than human.
      • PubMed(nucleotide/PMC)
        Citations in PubMed identified from shared sequence and PMC links.
      • RefSeq Proteins
        Link to Protein RefSeqs
      • Taxonomy
        Link to related taxonomy entry

      Links to other resources

      General information

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