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    yadB glutamyl-Q tRNA(Asp) synthetase [ Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91 ]

    Gene ID: 6924350, updated on 30-Mar-2013
    Gene symbol
    yadB
    Gene description
    glutamyl-Q tRNA(Asp) synthetase
    Locus tag
    SG0189
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91 (strain: 287/91, serovar: Gallinarum, sub-species: enterica)
    Lineage
    Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Salmonella
    Sequence :
    NC_011274.1 (217349..218290, complement)

    NC_011274.1Genomic Context describing neighboring genes Neighboring gene 3-methyl-2-oxobutanoate hydroxymethyltransferase Neighboring gene 2-amino-4-hydroxy-6-hydroxymethyldihyropteridine pyrophosphokinase Neighboring gene poly(A) polymerase I Neighboring gene RNA polymerase-binding transcription factor Neighboring gene sugar fermentation stimulation protein A

    Go to nucleotideGraphics FASTA GenBank

    Go to reference sequence details

    Related articles in PubMed

    1. Comparative genome analysis of Salmonella Enteritidis PT4 and Salmonella Gallinarum 287/91 provides insights into evolutionary and host adaptation pathways. Thomson NR, et al. Genome Res, 2008 Oct. PMID 18583645.

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Submit: New GeneRIF Correction

    Miscellaneous features

    • Loc: c218221-217373 HMMPfam hit to PF00749, Glutamyl/glutaminyl-tRNA synthetase, class Ic, score 5.9e-30
    Names
    glutamyl-Q tRNA(Asp) synthetase
    YP_002225325.1
    • this tRNA synthetase lacks the tRNA anticodon interaction domain; instead this enzyme modifies tRNA(Asp) with glutamate by esterifying glutamate to the 2-amino-5-(4,5-dihydroxy-2-cyclopenten-1-yl) moiety of queosine generating a modified nucleoside at the first anticodon position of tRNAAsp; the modified tRNA does not bind elongation factor Tu

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_011274.1

      Range
      217349..218290, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. YP_002225325.1 glutamyl-Q tRNA(Asp) synthetase [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91]

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      B5RHC4
      Conserved Domains (2) summary
      COG0008
      Location:16 – 310
      Blast Score: 854
      GlnS; Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
      PRK05710
      Location:16 – 308
      Blast Score: 1149
      PRK05710; glutamyl-Q tRNA(Asp) synthetase; Reviewed
    Nucleotide Protein
    Heading Accession and Version
    genomic AM933173.1 CAR36096.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases

      Supplemental Content

      Table of contents

      Related information

      • BioProjects
        BioProjects related to a gene
      • Conserved Domains
        Conserved Domain Database Links between Entrez Gene and Conserved Domain Database (CDD) are calculated from the domains annotated by the CDD group on Reference Sequence proteins.
      • Full text in PMC
        PMC links
      • Full text in PMC_nucleotide
        Full text in PubMedCentral identified from shared sequence links
      • Genome
        Genome records having the gene annotated on corresponding genomic reference sequence.
      • Nucleotide
        Link to related Nucleotide entry
      • Protein
        Link to related protein entry
      • Protein Clusters
        Related Protein Clusters
      • PubMed
        Links between Gene and PubMed are the result of the following: 1. Manual curation within NCBI. Part of the process of generating a REVIEWED RefSeq is an analysis of the current literature. Papers that are seminal in defining the gene, its sequence, and its function are added to the record at that time. Alert users point out gaps or errors in papers associated with a Gene record. These messages are reviewed and implemented as required. 2. Integration of information from other public databases. Gene integrates gene-citation from resources external to NCBI such as model organism-specific databases, Gene Ontology (GO), groups curating interactions, and sequence databases. The assumption in using these source is that they report citations specific to a gene in a known species. Gene does not process citations from OMIM automatically, because many of citations in OMIM refer to studies of genes in species other than human.
      • PubMed(nucleotide/PMC)
        Citations in PubMed identified from shared sequence and PMC links.
      • RefSeq Proteins
        Link to Protein RefSeqs
      • Taxonomy
        Link to related taxonomy entry

      Links to other resources

      General information

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