Taf11 TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor [Mus musculus (house mouse)] - Gene

Summary

Go to the top of the page Help

Official Symbol: Taf11provided by MGI
Official Full Name: TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factorprovided by MGI
Primary source: MGI:1916026
Locus tag: RP24-258K7.3
See related: Ensembl:ENSMUSG00000024218
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Mus musculus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Mus; Mus
Also known as: 28kDa; TAF2I; PRO214; TAFII28; AI115401; AL024207; AW552398; 1110038O14Rik

Genomic context

Go to the top of the page Help

Location :: 17 A3.3; 17

Sequence :: Chromosome: 17; NC_000083.6 (27901128..27907724, complement)

See Taf11 in Epigenomics, MapViewer

Chromosome 17 - NC_000083.6 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

Go to the top of the page Help

Genomic Sequence

Go to nucleotideGraphics FASTA GenBank

Go to reference sequence details

Bibliography

Go to the top of the page Help

GeneRIFs: Gene References Into Functions What's a GeneRIF?

Submit: New GeneRIF Correction

Pathways from BioSystems

Go to the top of the page Help

Basal transcription factors, organism-specific biosystem (from KEGG)
Basal transcription factors, organism-specific biosystem
Basal transcription factors
Basal transcription factors, conserved biosystem (from KEGG)
Basal transcription factors, conserved biosystem
Basal transcription factors
Gene Expression, organism-specific biosystem (from REACTOME)
Gene Expression, organism-specific biosystemcomputationally inferred pathway (not manually curated)
RNA Polymerase II Pre-transcription Events, organism-specific biosystem (from REACTOME)
RNA Polymerase II Pre-transcription Events, organism-specific biosystemcomputationally inferred pathway (not manually curated)
RNA Polymerase II Promoter Escape, organism-specific biosystem (from REACTOME)
RNA Polymerase II Promoter Escape, organism-specific biosystemcomputationally inferred pathway (not manually curated)
RNA Polymerase II Transcription, organism-specific biosystem (from REACTOME)
RNA Polymerase II Transcription, organism-specific biosystemcomputationally inferred pathway (not manually curated)
RNA Polymerase II Transcription Initiation, organism-specific biosystem (from REACTOME)
RNA Polymerase II Transcription Initiation, organism-specific biosystemcomputationally inferred pathway (not manually curated)
RNA Polymerase II Transcription Initiation And Promoter Clearance, organism-specific biosystem (from REACTOME)
RNA Polymerase II Transcription Initiation And Promoter Clearance, organism-specific biosystemcomputationally inferred pathway (not manually curated)
RNA Polymerase II Transcription Pre-Initiation And Promoter Opening, organism-specific biosystem (from REACTOME)
RNA Polymerase II Transcription Pre-Initiation And Promoter Opening, organism-specific biosystemcomputationally inferred pathway (not manually curated)

General gene information

Go to the top of the page Help

Markers

RH125498 (e-PCR)
- UniSTS:162316

RH135859 (e-PCR)
- UniSTS:209857

AW552398 (e-PCR)
- UniSTS:180985

Homology

Homologs of the Taf11 gene: The Taf11 gene is conserved in human, chimpanzee, Rhesus monkey, dog, cow, rat, chicken, zebrafish, fruit fly, mosquito, C.elegans, S.pombe, A.thaliana, and rice.
Map Viewer (Human, Rat)
OrthoDB: The Hierarchical Catalog of Eukaryotic Orthologs

Gene Ontology Provided by MGI

Function	Evidence Code	Pubs
DNA binding	IDA Inferred from Direct Assay more info	PubMed
protein N-terminus binding	ISO Inferred from Sequence Orthology more info
protein heterodimerization activity	IEA Inferred from Electronic Annotation more info
thyroid hormone receptor binding	ISO Inferred from Sequence Orthology more info
transcription coactivator activity	ISO Inferred from Sequence Orthology more info
vitamin D receptor binding	ISO Inferred from Sequence Orthology more info

Process	Evidence Code	Pubs
positive regulation by host of viral transcription	ISO Inferred from Sequence Orthology more info
regulation of transcription, DNA-dependent	IEA Inferred from Electronic Annotation more info
transcription initiation from RNA polymerase II promoter	IEA Inferred from Electronic Annotation more info
transcription, DNA-dependent	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
nucleus	IDA Inferred from Direct Assay more info	PubMed
transcription factor TFIID complex	ISO Inferred from Sequence Orthology more info	PubMed

General protein information

Go to the top of the page Help

Preferred Names: transcription initiation factor TFIID subunit 11

Names: transcription initiation factor TFIID subunit 11; TAFII-28; TAF(II)28; TFIID subunit p30-beta; transcription initiation factor TFIID 28 kDa subunit

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_026836.2 → NP_081112.1 transcription initiation factor TFIID subunit 11

Status: PROVISIONAL

Source sequence(s)

AK050689

Consensus CDS

CCDS28571.1

UniProtKB/Swiss-Prot

Q99JX1

Related

ENSMUSP00000025057, ENSMUST00000025057

Conserved Domains (1) summary

cd08048
Location:113 – 195
Blast Score: 397

TAF11; TATA Binding Protein (TBP) Associated Factor 11 (TAF11) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 103

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p1 C57BL/6J

Genomic

NC_000083.6 Reference GRCm38.p1 C57BL/6J

Range

27901128..27907724, complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCm38.p1 NOD/ShiLtJ

Genomic

NT_187005.1 Reference GRCm38.p1 NOD/ShiLtJ

Range

591060..597656, complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

Alternate Mm_Celera

Genomic

AC_000039.1 Alternate Mm_Celera

Range

28454198..28460799, complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

Nucleotide		Protein	Strain
Heading	Accession and Version	Protein	Strain
genomic	AAHY01131869.1 (12567..19168)	None
genomic	AC126040.3 (34954..41550)	None
genomic	CH466606.1	EDL22555.1	mixed
genomic	CT009659.6 (3199..9795)	None
genomic	CT009677.9 (11309..17905)	None
mRNA	AK004168.1	BAB23203.1	C57BL/6J
mRNA	AK050689.1	BAC34381.1	C57BL/6J
mRNA	AK133851.1	BAE21886.1	C57BL/6J
mRNA	AK183721.1	None
mRNA	AK188101.1	None
mRNA	BC005603.1	AAH05603.1