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Larp7 La ribonucleoprotein domain family, member 7 [ Rattus norvegicus (Norway rat) ]

Gene ID: 686883, updated on 8-May-2016
Official Symbol
Larp7provided by RGD
Official Full Name
La ribonucleoprotein domain family, member 7provided by RGD
Primary source
RGD:1592474
See related
Ensembl:ENSRNOG00000048989
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Rattus
Orthologs
Location:
chromosome: 2
Exon count:
13
Annotation release Status Assembly Chr Location
105 current Rnor_6.0 (GCF_000001895.5) 2 NC_005101.4 (231866888..231882002, complement)
104 previous assembly Rnor_5.0 (GCF_000001895.4) 2 NC_005101.3 (251212469..251227583, complement)

Chromosome 2 - NC_005101.4Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC103691694 Neighboring gene uncharacterized LOC103691695 Neighboring gene similar to Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase) Neighboring gene cellular nucleic acid-binding protein pseudogene Neighboring gene zinc finger, GRF-type containing 1 Neighboring gene neurogenin 2

Products Interactant Other Gene Complex Source Pubs Description

Markers

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
RNA binding IEA
Inferred from Electronic Annotation
more info
 
nucleotide binding IEA
Inferred from Electronic Annotation
more info
 
poly(A) RNA binding IEA
Inferred from Electronic Annotation
more info
 
poly(A) RNA binding ISO
Inferred from Sequence Orthology
more info
 
Process Evidence Code Pubs
RNA processing IEA
Inferred from Electronic Annotation
more info
 
germ cell proliferation ISO
Inferred from Sequence Orthology
more info
 
negative regulation of chromatin binding ISO
Inferred from Sequence Orthology
more info
 
negative regulation of transcription from RNA polymerase II promoter ISO
Inferred from Sequence Orthology
more info
 
positive regulation of G1/S transition of mitotic cell cycle ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 
Golgi apparatus ISO
Inferred from Sequence Orthology
more info
 
cytoplasm ISO
Inferred from Sequence Orthology
more info
 
intracellular ribonucleoprotein complex IEA
Inferred from Electronic Annotation
more info
 
nucleoplasm IEA
Inferred from Electronic Annotation
more info
 
nucleoplasm ISO
Inferred from Sequence Orthology
more info
 
nucleus IEA
Inferred from Electronic Annotation
more info
 
nucleus ISO
Inferred from Sequence Orthology
more info
 

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001044290.2NP_001037755.2  la-related protein 7

    See identical proteins and their annotated locations for NP_001037755.2

    Status: VALIDATED

    Source sequence(s)
    BC083898, FM031800
    UniProtKB/Swiss-Prot
    Q5XI01
    Related
    ENSRNOP00000065357, ENSRNOT00000073860
    Conserved Domains (4) summary
    cd08032
    Location:26106
    LARP_7; La RNA-binding domain of La-related protein 7
    smart00360
    Location:121183
    RRM; RNA recognition motif
    cd12290
    Location:121200
    RRM1_LARP7; RNA recognition motif 1 in La-related protein 7 (LARP7) and similar proteins
    cd12542
    Location:443524
    RRM2_LARP7; RNA recognition motif 2 in La-related protein 7 (LARP7) and similar proteins

RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 105 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Rnor_6.0 Primary Assembly

Genomic

  1. NC_005101.4 Reference Rnor_6.0 Primary Assembly

    Range
    231866888..231882002 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate Rn_Celera

Genomic

  1. AC_000070.1 Alternate Rn_Celera

    Range
    208314421..208329446 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)