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Gtf2e2 general transcription factor II E, polypeptide 2 (beta subunit) [ Mus musculus (house mouse) ]

Gene ID: 68153, updated on 26-Jun-2015
Official Symbol
Gtf2e2provided by MGI
Official Full Name
general transcription factor II E, polypeptide 2 (beta subunit)provided by MGI
Primary source
MGI:MGI:1915403
See related
Ensembl:ENSMUSG00000031585; Vega:OTTMUSG00000049715
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
34kDa; AI462509; C330006J08Rik
Orthologs
See Gtf2e2 in Epigenomics, MapViewer
Location:
8; 8 A4
Exon count:
12
Annotation release Status Assembly Chr Location
105 current GRCm38.p3 (GCF_000001635.23) 8 NC_000074.6 (33731914..33777173)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 8 NC_000074.5 (34842386..34887645)

Chromosome 8 - NC_000074.6Genomic Context describing neighboring genes Neighboring gene glutathione reductase Neighboring gene eukaryotic translation initiation factor 4A1 pseudogene Neighboring gene predicted gene, 40485 Neighboring gene small integral membrane protein 18 Neighboring gene RNA binding protein gene with multiple splicing Neighboring gene predicted gene, 26632 Neighboring gene predicted gene, 33588

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (1) 
Products Interactant Other Gene Complex Source Pubs Description

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
DNA binding IEA
Inferred from Electronic Annotation
more info
 
poly(A) RNA binding ISO
Inferred from Sequence Orthology
more info
 
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
regulation of transcription, DNA-templated IEA
Inferred from Electronic Annotation
more info
 
transcription initiation from RNA polymerase II promoter IEA
Inferred from Electronic Annotation
more info
 
transcription, DNA-templated IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
cytoplasm ISO
Inferred from Sequence Orthology
more info
 
nucleoplasm ISO
Inferred from Sequence Orthology
more info
 
nucleus ISO
Inferred from Sequence Orthology
more info
 
transcription factor TFIIE complex IEA
Inferred from Electronic Annotation
more info
 
Preferred Names
general transcription factor IIE subunit 2
Names
general transcription factor IIE subunit 2
TFIIE-beta
general transcription factor II E, polypeptide 2 (beta subunit, 34kD)
general transcription factor IIE, polypeptide 2 (beta subunit, 34kD)
transcription initiation factor IIE subunit beta

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001167921.1NP_001161393.1  general transcription factor IIE subunit 2

    See identical proteins and their annotated locations for NP_001161393.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) differs in the 5' UTR, compared to variant 1. Variants 1-3 encode the same protein.
    Source sequence(s)
    AK146803, AW538417, CX239577, DV042794
    Consensus CDS
    CCDS22236.1
    UniProtKB/TrEMBL
    Q3UIR2
    UniProtKB/Swiss-Prot
    Q9D902
    Related
    ENSMUSP00000126284, OTTMUSP00000068452, ENSMUST00000170705, OTTMUST00000126634
    Conserved Domains (1) summary
    cd07977
    Location:69147
    TFIIE_beta_winged_helix; TFIIE_beta_winged_helix domain, located at the central core region of TFIIE beta, with double-stranded DNA binding activity
  2. NM_001167922.1NP_001161394.1  general transcription factor IIE subunit 2

    See identical proteins and their annotated locations for NP_001161394.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript. Variants 1-3 encode the same protein.
    Source sequence(s)
    AK146803, AW538417, BX516160, DV042794
    Consensus CDS
    CCDS22236.1
    UniProtKB/TrEMBL
    Q3UIR2
    UniProtKB/Swiss-Prot
    Q9D902
    Related
    ENSMUSP00000132287, ENSMUST00000171010
    Conserved Domains (1) summary
    cd07977
    Location:69147
    TFIIE_beta_winged_helix; TFIIE_beta_winged_helix domain, located at the central core region of TFIIE beta, with double-stranded DNA binding activity
  3. NM_026584.3NP_080860.3  general transcription factor IIE subunit 2

    See identical proteins and their annotated locations for NP_080860.3

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR, compared to variant 1. Variants 1-3 encode the same protein.
    Source sequence(s)
    AK146803, AW538417, BY256665, DV042794
    Consensus CDS
    CCDS22236.1
    UniProtKB/TrEMBL
    Q3UIR2
    UniProtKB/Swiss-Prot
    Q9D902
    Related
    ENSMUSP00000129834, OTTMUSP00000068453, ENSMUST00000167264, OTTMUST00000126635
    Conserved Domains (1) summary
    cd07977
    Location:69147
    TFIIE_beta_winged_helix; TFIIE_beta_winged_helix domain, located at the central core region of TFIIE beta, with double-stranded DNA binding activity

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 105

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p3 C57BL/6J

Genomic

  1. NC_000074.6 Reference GRCm38.p3 C57BL/6J

    Range
    33731914..33777173
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006509186.1XP_006509249.1  

    See identical proteins and their annotated locations for XP_006509249.1

    UniProtKB/Swiss-Prot
    Q9D902
    Conserved Domains (1) summary
    cd07977
    Location:69147
    TFIIE_beta_winged_helix; TFIIE_beta_winged_helix domain, located at the central core region of TFIIE beta, with double-stranded DNA binding activity
  2. XM_006509187.1XP_006509250.1  

    See identical proteins and their annotated locations for XP_006509250.1

    UniProtKB/Swiss-Prot
    Q9D902
    Conserved Domains (1) summary
    cd07977
    Location:69147
    TFIIE_beta_winged_helix; TFIIE_beta_winged_helix domain, located at the central core region of TFIIE beta, with double-stranded DNA binding activity
  3. XM_006509188.2XP_006509251.1  

    See identical proteins and their annotated locations for XP_006509251.1

    UniProtKB/Swiss-Prot
    Q9D902
    Conserved Domains (1) summary
    cd07977
    Location:69147
    TFIIE_beta_winged_helix; TFIIE_beta_winged_helix domain, located at the central core region of TFIIE beta, with double-stranded DNA binding activity
  4. XM_006509185.2XP_006509248.1  

    Conserved Domains (1) summary
    cd07977
    Location:72150
    TFIIE_beta_winged_helix; TFIIE_beta_winged_helix domain, located at the central core region of TFIIE beta, with double-stranded DNA binding activity

Alternate Mm_Celera

Genomic

  1. AC_000030.1 Alternate Mm_Celera

    Range
    36366841..36414460
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)