Sign in to NCBI

Display Settings:

Format

Send to:

Choose Destination
We are sorry, but NCBI web applications do not support your browser and may not function properly. More information

    2810417H13Rik RIKEN cDNA 2810417H13 gene [ Mus musculus (house mouse) ]

    Gene ID: 68026, updated on 16-Mar-2013
    Official Symbol
    2810417H13Rikprovided by MGI
    Official Full Name
    RIKEN cDNA 2810417H13 geneprovided by MGI
    Primary source
    MGI:1915276
    See related
    Ensembl:ENSMUSG00000040204; Vega:OTTMUSG00000029849
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Paf; PAF15; Ns5apt9; Ns5atp9; AA409629; p15(PAF); mKIAA0101
    Location :
    9 C; 9
    Sequence :
    Chromosome: 9; NC_000075.6 (65890323..65903551)
    See 2810417H13Rik in Epigenomics, MapViewer

    Chromosome 9 - NC_000075.6Genomic Context describing neighboring genes Neighboring gene zinc finger protein 609 Neighboring gene ribosomal protein S2 pseudogene Neighboring gene thyroid hormone receptor interactor 4 Neighboring gene casein kinase 1, gamma 1 Neighboring gene sorting nexin 22 Neighboring gene peptidylprolyl isomerase B

    Go to nucleotideGraphics FASTA GenBank

    Go to reference sequence details

    Related articles in PubMed

    1. The Paf oncogene is essential for hematopoietic stem cell function and development. Amrani YM, et al. J Exp Med, 2011 Aug 29. PMID 21844206.
    2. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750.
    3. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068.
    4. ATF3 and p15PAF are novel gatekeepers of genomic integrity upon UV stress. Turchi L, et al. Cell Death Differ, 2009 May. PMID 19219066.
    5. Murine embryonic expression of the gene for the UV-responsive protein p15(PAF). van Bueren KL, et al. Gene Expr Patterns, 2007 Jan. PMID 16815099.

    See all (20) citations in PubMed

    See citations in PubMed for homologs of this gene provided by HomoloGene

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    1. Paf as a novel and essential regulator of early hematopoiesis.
      Title: The Paf oncogene is essential for hematopoietic stem cell function and development.
    2. highly restricted expression of the p15(PAF) gene in a spatio-temporal manner during embryogenesis
      Title: Murine embryonic expression of the gene for the UV-responsive protein p15(PAF).
    Submit: New GeneRIF Correction
    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Markers

    Genotypes

    Homology

    Clone Names

    • MGC29306

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    chromatin binding ISO
    Inferred from Sequence Orthology
    more info
    		  
    Process Evidence Code Pubs
    DNA repair IEA
    Inferred from Electronic Annotation
    more info
    		  
    DNA replication ISO
    Inferred from Sequence Orthology
    more info
    		  
    centrosome organization ISO
    Inferred from Sequence Orthology
    more info
    		  
    regulation of cell cycle ISO
    Inferred from Sequence Orthology
    more info
    		  
    response to DNA damage stimulus ISO
    Inferred from Sequence Orthology
    more info
    		  
    response to UV ISO
    Inferred from Sequence Orthology
    more info
    		  
    translesion synthesis ISO
    Inferred from Sequence Orthology
    more info
    		  
    Component Evidence Code Pubs
    cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  
    nucleus ISO
    Inferred from Sequence Orthology
    more info
    		  
    perinuclear region of cytoplasm ISO
    Inferred from Sequence Orthology
    more info
    		  
    Preferred Names
    PCNA-associated factor
    Names
    PCNA-associated factor
    p15PAF
    PCNA-associated factor of 15 kDa
    HCV NS5A-transactivated protein 9 homolog

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_026515.2 → NP_080791.2  PCNA-associated factor

      Status: VALIDATED

      Source sequence(s)
      AC112676, AK011090, AK011835
      Consensus CDS
      CCDS23299.1
      UniProtKB/Swiss-Prot
      Q9CQX4
      Related
      ENSMUSP00000038877, OTTMUSP00000038433, ENSMUST00000045802, OTTMUST00000074077

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 103

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p1 C57BL/6J

    Genomic

    1. NC_000075.6 Reference GRCm38.p1 C57BL/6J

      Range
      65890323..65903551
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate Mm_Celera

    Genomic

    1. AC_000031.1 Alternate Mm_Celera

      Range
      63128991..63142582
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version
    genomic AAHY01078951.1 (22721..28142) None
    genomic AAHY01078952.1 None
    genomic AAHY01078953.1 None
    genomic AAHY01078954.1 (4569..4720) None
    genomic AC112676.8 (1621..3126) None
    genomic AC151906.3 (39396..52624) None
    genomic CH466522.1 EDL26107.1 mixed
    mRNA AK011090.1 BAB27391.1 C57BL/6J
    mRNA AK011645.1 None C57BL/6J
    mRNA AK011835.1 BAB27868.1 C57BL/6J
    mRNA AK012140.1 None C57BL/6J
    mRNA AK013105.1 BAB28650.1 C57BL/6J
    mRNA AK017673.1 BAB30866.1 C57BL/6J
    mRNA AK018528.1 None C57BL/6J
    mRNA AK214044.1 None
    mRNA AK214296.1 None
    mRNA AY496943.1 AAR90858.1
    mRNA BC021413.1 AAH21413.1 FVB/N-3
    mRNA BC096393.1 AAH96393.1 C57BL/6J
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9CQX4.1 GenPept UniProtKB/Swiss-Prot:Q9CQX4

    Additional Links

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Chemical Information
    Molecular Biology Databases
    Research Materials
    Tools
    Miscellaneous

      Supplemental Content

      Table of contents

      Related information

      • Order cDNA clone
        Order cDNA clone
      • BioProjects
        BioProjects related to a gene
      • CCDS
        Links from Gene to CCDS are established if a gene encodes a protein sequence that is a member of a Consensus CDS (CCDS).
      • dbVar
        Link from Gene to dbVar
      • Full text in PMC
        PMC links
      • Full text in PMC_nucleotide
        Full text in PubMedCentral identified from shared sequence links
      • Genome
        Genome records having the gene annotated on corresponding genomic reference sequence.
      • GEO Profiles
        Related GEO
      • HomoloGene
        Links between HomoloGene and Gene are provided by the HomoloGene group when a gene is included in a HomoloGene record.
      • Map Viewer
        These links are maintained by the Map Viewer group and are provided when a GeneID is annotated on a map for the same species.
      • Nucleotide
        Link to related Nucleotide entry
      • Probe
        Related Probe entry
      • Protein
        Link to related protein entry
      • PubChem Substance
        PubChem Substances
      • PubMed
        Links between Gene and PubMed are the result of the following: 1. Manual curation within NCBI. Part of the process of generating a REVIEWED RefSeq is an analysis of the current literature. Papers that are seminal in defining the gene, its sequence, and its function are added to the record at that time. Alert users point out gaps or errors in papers associated with a Gene record. These messages are reviewed and implemented as required. 2. Integration of information from other public databases. Gene integrates gene-citation from resources external to NCBI such as model organism-specific databases, Gene Ontology (GO), groups curating interactions, and sequence databases. The assumption in using these source is that they report citations specific to a gene in a known species. Gene does not process citations from OMIM automatically, because many of citations in OMIM refer to studies of genes in species other than human.
      • PubMed (GeneRIF)
        GeneRIF -- Gene Reference Into Function Staff of the Index Section in the National Library of Medicine review the current literature. When they find articles focused on the structure and function of a gene, they write a brief summary of the impact of the paper and make the connection between the citation (PubMed) and Gene. An interface exists for interested users to submit such data as well. http://www.ncbi.nlm.nih.gov/projects/GeneRIF/GeneRIFhelp.html
      • PubMed(nucleotide/PMC)
        Citations in PubMed identified from shared sequence and PMC links.
      • RefSeq Proteins
        Link to Protein RefSeqs
      • RefSeq RNAs
        Link to Nucleotide RefSeq RNAs
      • SNP
        Related SNP records
      • SNP: GeneView
        SNPs linked from GeneView
      • SNP: Genotype
        Gene Genotype Report
      • Taxonomy
        Link to related taxonomy entry
      • UniGene
        Links are provided between Gene and UniGene when both databases calculate links to the same mRNA record (gi).
      • UniSTS
        Related UniSTS records

      Links to other resources

      General information

      Related sites

      Feedback

      Subscription

      Recent activity

      Clear Turn Off Turn On

      Your browsing activity is empty.

      Activity recording is turned off.

      Turn recording back on

      See more...