U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Ccdc27 coiled-coil domain containing 27 [ Rattus norvegicus (Norway rat) ]

Gene ID: 679584, updated on 30-Mar-2024

Summary

Go to the top of the page Help
Official Symbol
Ccdc27provided by RGD
Official Full Name
coiled-coil domain containing 27provided by RGD
Primary source
RGD:1587099
See related
Ensembl:ENSRNOG00000056358 AllianceGenome:RGD:1587099
Gene type
protein coding
RefSeq status
INFERRED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Orthologous to human CCDC27 (coiled-coil domain containing 27). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in Testes (RPKM 53.2) and Kidney (RPKM 4.0) See more
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
5q36
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 5 NC_086023.1 (169867706..169881820, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 5 NC_051340.1 (164585285..164599391, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 5 NC_005104.4 (171312790..171327581, complement)

Chromosome 5 - NC_086023.1Genomic Context describing neighboring genes Neighboring gene centrosomal protein 104 Neighboring gene leucine rich repeat containing 47 Neighboring gene uncharacterized LOC120103048 Neighboring gene small integral membrane protein 1 (Vel blood group) Neighboring gene uncharacterized LOC102551562 Neighboring gene uncharacterized LOC134479057 Neighboring gene tumor protein p73

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

General protein information

Go to the top of the page Help
Preferred Names
coiled-coil domain-containing protein 27

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001191063.1 → NP_001177992.1  coiled-coil domain-containing protein 27

    Status: INFERRED

    Source sequence(s)
    JAXUCZ010000005
    UniProtKB/TrEMBL
    A0A0G2JV67, A0A8I6G7V0
    Related
    ENSRNOP00000069368.2, ENSRNOT00000088710.2
    Conserved Domains (2) summary
    pfam15619
    Location:375 → 554
    Lebercilin; Ciliary protein causing Leber congenital amaurosis disease
    cl15415
    Location:376 → 608
    Sec1; Sec1 family

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086023.1 Reference GRCr8

    Range
    169867706..169881820 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039110744.2 → XP_038966672.1  coiled-coil domain-containing protein 27 isoform X1

    Conserved Domains (1) summary
    COG1196
    Location:239 → 422
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

  2. XM_039110746.2 → XP_038966674.1  coiled-coil domain-containing protein 27 isoform X3

    Conserved Domains (1) summary
    COG1196
    Location:178 → 361
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

  3. XM_039110745.2 → XP_038966673.1  coiled-coil domain-containing protein 27 isoform X2

    UniProtKB/TrEMBL
    A0A8I6G7V0

  4. XM_063288372.1 → XP_063144442.1  coiled-coil domain-containing protein 27 isoform X4

Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.