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    CDKL5 cyclin-dependent kinase-like 5 [ Homo sapiens (human) ]

    Gene ID: 6792, updated on 16-May-2013
    Official Symbol
    CDKL5provided by HGNC
    Official Full Name
    cyclin-dependent kinase-like 5provided by HGNC
    Primary source
    HGNC:11411
    Locus tag
    RP1-245G19.3
    See related
    Ensembl:ENSG00000008086; HPRD:02190; MIM:300203; Vega:OTTHUMG00000021214
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    ISSX; STK9; EIEE2
    Summary
    This gene is a member of Ser/Thr protein kinase family and encodes a phosphorylated protein with protein kinase activity. Mutations in this gene have been associated with X-linked infantile spasm syndrome (ISSX), also known as X-linked West syndrome, and Rett syndrome (RTT). Alternate transcriptional splice variants have been characterized. [provided by RefSeq, Jul 2008]
    Location :
    Xp22
    Sequence :
    Chromosome: X; NC_000023.10 (18443725..18671749)
    See CDKL5 in Epigenomics, MapViewer

    Chromosome X - NC_000023.10Genomic Context describing neighboring genes Neighboring gene BEN domain containing 2 Neighboring gene sex comb on midleg-like 2 (Drosophila) Neighboring gene thymosin beta 10 pseudogene 2 Neighboring gene gap junction protein, alpha 6, pseudogene Neighboring gene transfer RNA valine 19 (anticodon UAC) Neighboring gene retinoschisin 1 Neighboring gene protein phosphatase, EF-hand calcium binding domain 1

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Angelman syndrome

    Summary from GeneReviews: Angelman Syndrome Go to GeneReviews

    Disease Characteristics
    Angelman syndrome (AS) is characterized by severe developmental delay or intellectual disability, severe speech impairment, gait ataxia and/or tremulousness of the limbs, and a unique behavior with an inappropriate happy demeanor that includes frequent laughing, smiling, and excitability. Microcephaly and seizures are also common. Developmental delays are first noted at around age six months; however, the unique clinical features of AS do not become manifest until after age one year, and it can take several years before the correct clinical diagnosis is obvious.
    Diagnosis Testing
    The diagnosis of AS rests on a combination of clinical features and molecular genetic testing and/or cytogenetic analysis. Consensus clinical diagnostic criteria for AS have been developed. Analysis of parent-specific DNA methylation imprints in the 15q11.2-q13 chromosome region detects approximately 78% of individuals with AS, including those with a deletion, uniparental disomy (UPD), or an imprinting defect (ID); fewer than 1% of individuals have a cytogenetically visible chromosome rearrangement (i.e., translocation or inversion). UBE3A sequence analysis detects mutations in an additional approximately 11% of individuals. Accordingly, molecular genetic testing (methylation analysis and UBE3A sequence analysis) identifies alterations in approximately 90% of individuals. The remaining 10% of individuals with classic phenotypic features of AS have the disorder as a result of an as-yet unidentified genetic mechanism and thus are not amenable to diagnostic testing.
    Genetic Counseling
    AS is caused by disruption of maternally imprinted UBE3A located within the 15q11.2-q13 Angelman syndrome/Prader-Willi syndrome (AS/PWS) region. The risk to sibs of a proband depends on the genetic mechanism leading to the loss of UBE3A function: typically less than 1% risk for probands with a deletion or UPD, and as high as 50% for probands with an ID or a mutation of UBE3A. Members of the mother's extended family are also at increased risk when an ID or a UBE3A mutation is present. Cytogenetically visible chromosome rearrangements may be inherited but are usually de novo. Prenatal testing for pregnancies at increased risk is possible when the underlying genetic mechanism is a deletion, UPD, an ID, a UBE3A mutation, or a chromosome rearrangement.
    References
    Products Interactant Other Gene Complex Source Pubs Description
    BioGRID:112668 BioGRID:112668 CDKL5    BioGRID  PubMed Biochemical Activity 
    BioGRID:112668 BioGRID:199230 Dlg4    BioGRID  PubMed Protein-peptide 
    BioGRID:112668 BioGRID:110368 MECP2    BioGRID  PubMed Affinity Capture-Western; Reconstituted Complex 
    BioGRID:112668 BioGRID:110411 MGMT    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:112668 BioGRID:112390 SKIV2L    BioGRID  PubMed Two-hybrid 
    • BDNF signaling pathway, organism-specific biosystem (from WikiPathways)
      BDNF signaling pathway, organism-specific biosystemBrain-derived neurotrophic factor (BDNF) is a neurotrophin essential for growth, differentiation, plasticity, and survival of neurons. BDNF is also required for processes such as energy metabolism, b...

    Markers

    Homology

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    ATP binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    Rac GTPase binding ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    cyclin-dependent protein serine/threonine kinase activity IEA
    Inferred from Electronic Annotation
    more info
     
    kinase activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    protein kinase activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    protein serine/threonine kinase activity TAS
    Traceable Author Statement
    more info
    PubMed 
    Process Evidence Code Pubs
    neuron migration ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    positive regulation of Rac GTPase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    positive regulation of axon extension ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    positive regulation of dendrite morphogenesis ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    protein autophosphorylation IDA
    Inferred from Direct Assay
    more info
    PubMed 
    protein phosphorylation TAS
    Traceable Author Statement
    more info
    PubMed 
    regulation of dendrite development ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    Component Evidence Code Pubs
    cytoplasm IDA
    Inferred from Direct Assay
    more info
     
    dendrite cytoplasm ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    dendritic growth cone ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    NOT nucleolus IDA
    Inferred from Direct Assay
    more info
     
    nucleus IDA
    Inferred from Direct Assay
    more info
     
    colocalizes_with ruffle membrane ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    Preferred Names
    cyclin-dependent kinase-like 5
    Names
    cyclin-dependent kinase-like 5
    serine/threonine kinase 9
    serine/threonine-protein kinase 9
    cyclin dependent kinase 5 transcript
    NP_001032420.1
    NP_003150.1

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_008475.1 RefSeqGene

      Range
      5001..233025
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001037343.1NP_001032420.1  cyclin-dependent kinase-like 5

      Status: REVIEWED

      Description
      Transcript Variant: This variant (II) differs in the 5' UTR compared to variant 1. Variants I and II encode the same protein.
      Source sequence(s)
      AI286150, AL704691, AY217744, BC036091
      Consensus CDS
      CCDS14186.1
      UniProtKB/Swiss-Prot
      O76039
      Related
      ENSP00000369325, OTTHUMP00000023002, ENST00000379989, OTTHUMT00000055945
      Conserved Domains (2) summary
      cd07848
      Location:11297
      Blast Score: 1469
      STKc_CDKL5; Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase Like 5
      pfam00069
      Location:13297
      Blast Score: 667
      Pkinase; Protein kinase domain
    2. NM_003159.2NP_003150.1  cyclin-dependent kinase-like 5

      Status: REVIEWED

      Description
      Transcript Variant: This variant (I) represents the longer transcript. Variants I and II encode the same protein.
      Source sequence(s)
      AI286150, AY217744, BC010966
      Consensus CDS
      CCDS14186.1
      UniProtKB/Swiss-Prot
      O76039
      Related
      ENSP00000369332, OTTHUMP00000023003, ENST00000379996, OTTHUMT00000055946
      Conserved Domains (2) summary
      cd07848
      Location:11297
      Blast Score: 1469
      STKc_CDKL5; Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase Like 5
      pfam00069
      Location:13297
      Blast Score: 667
      Pkinase; Protein kinase domain

    RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 104

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh37.p10 Primary Assembly

    Genomic

    1. NC_000023.10 Reference GRCh37.p10 Primary Assembly

      Range
      18443725..18671749
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate HuRef

    Genomic

    1. AC_000155.1 Alternate HuRef

      Range
      16199185..16425423
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate CHM1_1.0

    Genomic

    1. NC_018934.1 Alternate CHM1_1.0

      Range
      18357186..18585313
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

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