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Pef1 penta-EF hand domain containing 1 [ Mus musculus (house mouse) ]

Gene ID: 67898, updated on 28-May-2016
Official Symbol
Pef1provided by MGI
Official Full Name
penta-EF hand domain containing 1provided by MGI
Primary source
MGI:MGI:1915148
See related
Ensembl:ENSMUSG00000028779 Vega:OTTMUSG00000009515
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Peflin; 2600002E23Rik
Orthologs
Location:
4; 4 D3
Exon count:
5
Annotation release Status Assembly Chr Location
105 current GRCm38.p3 (GCF_000001635.23) 4 NC_000070.6 (130107556..130128134)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 4 NC_000070.5 (129784800..129805378)

Chromosome 4 - NC_000070.6Genomic Context describing neighboring genes Neighboring gene adhesion G protein-coupled receptor B2 Neighboring gene predicted gene 12963 Neighboring gene collagen, type XVI, alpha 1 Neighboring gene predicted gene, 40258 Neighboring gene hypocretin (orexin) receptor 1 Neighboring gene predicted gene, 40259

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (2) 

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
calcium ion binding IEA
Inferred from Electronic Annotation
more info
 
calcium-dependent cysteine-type endopeptidase activity IBA
Inferred from Biological aspect of Ancestor
more info
 
metal ion binding IEA
Inferred from Electronic Annotation
more info
 
poly(A) RNA binding ISO
Inferred from Sequence Orthology
more info
 
protein dimerization activity ISO
Inferred from Sequence Orthology
more info
 
protein heterodimerization activity ISO
Inferred from Sequence Orthology
more info
 
Process Evidence Code Pubs
proteolysis IBA
Inferred from Biological aspect of Ancestor
more info
 
response to calcium ion ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
 
cytoplasm ISO
Inferred from Sequence Orthology
more info
 
extracellular exosome ISO
Inferred from Sequence Orthology
more info
 
membrane IEA
Inferred from Electronic Annotation
more info
 
Preferred Names
peflin
Names
PEF protein with a long N-terminal hydrophobic domain
penta-EF hand domain-containing protein 1

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_026441.4NP_080717.2  peflin

    See identical proteins and their annotated locations for NP_080717.2

    Status: PROVISIONAL

    Source sequence(s)
    AL606925
    Consensus CDS
    CCDS18706.1
    UniProtKB/Swiss-Prot
    Q8BFY6
    Related
    ENSMUSP00000030563, ENSMUST00000030563
    Conserved Domains (3) summary
    cd00051
    Location:114172
    EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
    pfam13499
    Location:115171
    EF-hand_7; EF-hand domain pair
    cl08302
    Location:178269
    EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 105 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p3 C57BL/6J

Genomic

  1. NC_000070.6 Reference GRCm38.p3 C57BL/6J

    Range
    130107556..130128134
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCm38.p3 NOD/MrkTac

Genomic

  1. NT_187023.1 Reference GRCm38.p3 NOD/MrkTac

    Range
    1708234..1728812
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate Mm_Celera

Genomic

  1. AC_000026.1 Alternate Mm_Celera

    Range
    128442027..128462609
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)