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    SSRP1 structure specific recognition protein 1 [ Homo sapiens ]

    Gene ID: 6749, updated on 19-May-2012

    Summary

    Official Symbol
    SSRP1provided by HGNC
    Official Full Name
    structure specific recognition protein 1provided by HGNC
    Primary source
    HGNC:11327
    See related
    Ensembl:ENSG00000149136; HPRD:05061; MIM:604328; Vega:OTTHUMG00000167024
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    FACT; T160; FACT80
    Summary
    The protein encoded by this gene is a subunit of a heterodimer that, along with SUPT16H, forms chromatin transcriptional elongation factor FACT. FACT interacts specifically with histones H2A/H2B to effect nucleosome disassembly and transcription elongation. FACT and cisplatin-damaged DNA may be crucial to the anticancer mechanism of cisplatin. This encoded protein contains a high mobility group box which most likely constitutes the structure recognition element for cisplatin-modified DNA. This protein also functions as a co-activator of the transcriptional activator p63. An alternatively spliced transcript variant of this gene has been described, but its full-length nature is not known. [provided by RefSeq, Jul 2008]

    Genomic context

    Location :
    11q12
    Sequence :
    Chromosome: 11; NC_000011.9 (57093459..57103351, complement)
    See SSRP1 in Epigenomics, MapViewer

    Chromosome 11 - NC_000011.9Genomic Context describing neighboring genes Neighboring gene apelin receptor Neighboring gene tankyrase 1 binding protein 1, 182kDa Neighboring gene purinergic receptor P2X, ligand-gated ion channel, 3 Neighboring gene proteoglycan 3

    Genomic regions, transcripts, and products

    Bibliography

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description
    NP_003137.1 NC_000012.9 HNF1A    BIND  PubMed FACT interacts with the HNF-1 gene. 
    Q08945 O14646 CHD1    HPRD  PubMed  
    Q08945 Q7LBR1 CHMP1B    HPRD  PubMed  
    Q08945 P68400 CSNK2A1    HPRD  PubMed  
    Q08945 Q08211 DHX9    HPRD  PubMed  
    Q08945 Q01780 EXOSC10    HPRD  PubMed  
    Q08945 P33991 MCM4    HPRD  PubMed  
    Q08945 Q99417 MYCBP    HPRD  PubMed  
    Q08945 Q8TD19 NEK9    HPRD  PubMed  
    Q08945 P62826 RAN    HPRD  PubMed  
    Q08945 Q9HCK4 ROBO2    HPRD  PubMed  
    Q08945 P17947 SPI1    HPRD  PubMed  
    Q08945 Q8WXA9 SREK1    HPRD  PubMed  
    Q08945 P11831 SRF    HPRD  PubMed  
    BioGRID:112627 BioGRID:106823 AIRE    BioGRID  PubMed Affinity Capture-MS; Affinity Capture-Western 
    BioGRID:112627 BioGRID:121948 C12orf44    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:112627 BioGRID:107358 CD4    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:112627 BioGRID:107530 CHD1    BioGRID  PubMed Co-purification 
    BioGRID:112627 BioGRID:59725 Chd1    BioGRID  PubMed Two-hybrid 
    BioGRID:112627 BioGRID:198693 Chd1    BioGRID  PubMed Two-hybrid 
    BioGRID:112627 BioGRID:109268 H2AFX    BioGRID  PubMed Affinity Capture-MS; Reconstituted Complex 
    BioGRID:112627 BioGRID:109272 H3F3A    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:112627 BioGRID:109318 HDGF    BioGRID  PubMed Affinity Capture-MS; Affinity Capture-Western 
    BioGRID:112627 BioGRID:113946 HIST1H3A    BioGRID  PubMed Reconstituted Complex 
    BioGRID:112627 BioGRID:110339 MCM2    BioGRID  PubMed Affinity Capture-MS; Affinity Capture-Western 
    BioGRID:112627 BioGRID:110340 MCM3    BioGRID  PubMed Affinity Capture-MS; Affinity Capture-Western 
    BioGRID:112627 BioGRID:110341 MCM4    BioGRID  PubMed Affinity Capture-MS; Affinity Capture-Western; Reconstituted Complex 
    BioGRID:112627 BioGRID:110342 MCM5    BioGRID  PubMed Affinity Capture-MS; Affinity Capture-Western 
    BioGRID:112627 BioGRID:110343 MCM6    BioGRID  PubMed Affinity Capture-MS; Affinity Capture-Western 
    BioGRID:112627 BioGRID:110344 MCM7    BioGRID  PubMed Affinity Capture-MS; Affinity Capture-Western 
    BioGRID:112627 BioGRID:110411 MGMT    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:112627 BioGRID:121642 MKL1    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:112627 BioGRID:128982 MMS22L    BioGRID  PubMed Affinity Capture-MS; Affinity Capture-Western 
    BioGRID:112627 BioGRID:117673 MYCBP    BioGRID  PubMed Two-hybrid 
    BioGRID:112627 BioGRID:110815 NEDD8    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:112627 BioGRID:124876 NEK9    BioGRID  PubMed Affinity Capture-MS; Affinity Capture-Western 
    BioGRID:112627 BioGRID:117396 POLR1A    BioGRID  PubMed Affinity Capture-MS; Affinity Capture-Western 
    BioGRID:112627 BioGRID:111426 POLR2A    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:112627 BioGRID:120840 POLR3E    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:112627 BioGRID:121244 SMARCAD1    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:112627 BioGRID:126754 SREK1    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:112627 BioGRID:112600 SRF    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:112627 BioGRID:112627 SSRP1    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:112627 BioGRID:113188 SUMO1    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:112627 BioGRID:112497 SUMO2    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:112627 BioGRID:116367 SUPT16H    BioGRID  PubMed Affinity Capture-MS; Affinity Capture-Western; Co-purification 
    BioGRID:112627 BioGRID:110863 TONSL    BioGRID  PubMed Affinity Capture-MS; Affinity Capture-Western 
    BioGRID:112627 BioGRID:119625 TRIM33    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:112627 BioGRID:113164 UBC    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:112627 BioGRID:1205541 tat    BioGRID  PubMed Reconstituted Complex 

    General gene information

    Markers

    Homology

    • Homologs of the SSRP1 gene: The SSRP1 gene is conserved in , dog, cow, mouse, rat, chicken, zebrafish, fruit fly, mosquito, C.elegans, A.thaliana, and rice.
    • Map Viewer (Mouse, Rat)

    Pathways from BioSystems

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    DNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Process Evidence Code Pubs
    DNA repair IEA
    Inferred from Electronic Annotation
    more info
     
    DNA replication IEA
    Inferred from Electronic Annotation
    more info
     
    gene expression TAS
    Traceable Author Statement
    more info
     
    positive regulation of viral transcription TAS
    Traceable Author Statement
    more info
     
    regulation of transcription, DNA-dependent IEA
    Inferred from Electronic Annotation
    more info
     
    transcription elongation from RNA polymerase II promoter TAS
    Traceable Author Statement
    more info
     
    transcription from RNA polymerase II promoter TAS
    Traceable Author Statement
    more info
     
    viral reproduction TAS
    Traceable Author Statement
    more info
     
    Component Evidence Code Pubs
    chromosome IEA
    Inferred from Electronic Annotation
    more info
     
    cytoplasm IDA
    Inferred from Direct Assay
    more info
    PubMed 
    nucleoplasm TAS
    Traceable Author Statement
    more info
     
    nucleus IDA
    Inferred from Direct Assay
    more info
    PubMed 

    General protein information

    Preferred Names
    FACT complex subunit SSRP1
    Names
    FACT complex subunit SSRP1
    hSSRP1
    FACTp80
    cisplatin-DNA SSRP
    FACT 80 kDa subunit
    high mobility group box
    structure-specific recognition protein 1
    facilitates chromatin remodeling 80 kDa subunit
    recombination signal sequence recognition protein 1
    facilitates chromatin transcription complex subunit SSRP1
    facilitates chromatin transcription complex 80 kDa subunit
    chromatin-specific transcription elongation factor 80 kDa subunit

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_003146.2NP_003137.1  FACT complex subunit SSRP1

      Status: REVIEWED

      Source sequence(s)
      M86737
      Consensus CDS
      CCDS7952.1
      UniProtKB/Swiss-Prot
      Q08945
      Related
      ENSP00000278412, OTTHUMP00000234768, ENST00000278412, OTTHUMT00000392460
      Conserved Domains (4) summary
      cd01390
      Location:547612
      Blast Score: 206
      HMGB-UBF_HMG-box; HMGB-UBF_HMG-box, class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone ...
      COG5165
      Location:21466
      Blast Score: 838
      POB3; Nucleosome-binding factor SPN, POB3 subunit [Transcription / DNA replication, recombination, and repair / Chromatin structure and dynamics]
      pfam03531
      Location:74285
      Blast Score: 982
      SSrecog; Structure-specific recognition protein (SSRP1)
      pfam08512
      Location:340427
      Blast Score: 300
      Rtt106; Histone chaperone Rttp106-like

    RefSeqs of Annotated Genomes: Build 37.3

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh37.p5 Primary Assembly

    Genomic

    1. NC_000011.9 Reference GRCh37.p5 Primary Assembly

      Range
      57093459..57103351, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate HuRef

    Genomic

    1. AC_000143.1 Alternate HuRef

      Range
      53442342..53452234, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Related Sequences

    Nucleotide Protein
    Heading Accession and Version
    genomic AP000781.6 (81300..91192) None
    genomic CH471076.1 EAW73734.1
      EAW73735.1
    mRNA AB209132.1 BAD92369.1
    mRNA BC005116.1 AAH05116.1
    mRNA BC091486.1 AAH91486.1
    mRNA M86737.1 AAA58660.1
    other-genetic DQ893659.2 ABM84585.1
    other-genetic DQ895832.2 ABM86758.1
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q08945.1 GenPept UniProtKB/Swiss-Prot:Q08945
    Q59GH7 GenPept UniProtKB/TrEMBL:Q59GH7

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