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Rnpc3 RNA-binding region (RNP1, RRM) containing 3 [ Mus musculus (house mouse) ]

Gene ID: 67225, updated on 28-May-2016
Official Symbol
Rnpc3provided by MGI
Official Full Name
RNA-binding region (RNP1, RRM) containing 3provided by MGI
Primary source
MGI:MGI:1914475
See related
Ensembl:ENSMUSG00000027981 Vega:OTTMUSG00000022379
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
AI447568; 2810441O16Rik; C030014B17Rik
Annotation information
Annotation category: suggests misassembly
Orthologs
Location:
3; 3 G1
Exon count:
15
Annotation release Status Assembly Chr Location
105 current GRCm38.p3 (GCF_000001635.23) 3 NC_000069.6 (113605067..113630149, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 3 NC_000069.5 (113307985..113333067, complement)

Chromosome 3 - NC_000069.6Genomic Context describing neighboring genes Neighboring gene amylase 2a1 Neighboring gene amylase 1, salivary Neighboring gene ribosomal protein L5 pseudogene Neighboring gene mortality factor 4 like 2 pseudogene

Products Interactant Other Gene Complex Source Pubs Description

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
RNA binding IEA
Inferred from Electronic Annotation
more info
 
U12 snRNA binding IBA
Inferred from Biological aspect of Ancestor
more info
 
nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 
nucleotide binding IEA
Inferred from Electronic Annotation
more info
 
pre-mRNA intronic binding IBA
Inferred from Biological aspect of Ancestor
more info
 
Process Evidence Code Pubs
developmental process IBA
Inferred from Biological aspect of Ancestor
more info
 
mRNA splicing, via spliceosome IBA
Inferred from Biological aspect of Ancestor
more info
 
Component Evidence Code Pubs
U12-type spliceosomal complex IBA
Inferred from Biological aspect of Ancestor
more info
 
U12-type spliceosomal complex ISO
Inferred from Sequence Orthology
more info
 
nucleoplasm ISO
Inferred from Sequence Orthology
more info
 
nucleus ISS
Inferred from Sequence or Structural Similarity
more info
PubMed 
Preferred Names
RNA-binding protein 40
Names
RNA-binding motif protein 40
RNA-binding region-containing protein 3

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001038696.1NP_001033785.1  RNA-binding protein 40 isoform a

    See identical proteins and their annotated locations for NP_001033785.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript and encodes the longer isoform (a). Variants 1 and 2 encode the same protein (isoform a).
    Source sequence(s)
    AK134241, AK161063, BY004661
    Consensus CDS
    CCDS17777.1
    UniProtKB/Swiss-Prot
    Q3UZ01
    Related
    ENSMUSP00000089792, OTTMUSP00000025418, ENSMUST00000092154, OTTMUST00000053459
    Conserved Domains (3) summary
    smart00360
    Location:2897
    RRM; RNA recognition motif
    cd12238
    Location:28100
    RRM1_RBM40_like; RNA recognition motif 1 in RNA-binding protein 40 (RBM40) and similar proteins
    cd12239
    Location:417499
    RRM2_RBM40_like; RNA recognition motif 2 in RNA-binding protein 40 (RBM40) and similar proteins
  2. NM_001287015.1NP_001273944.1  RNA-binding protein 40 isoform b

    See identical proteins and their annotated locations for NP_001273944.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) uses an alternate in-frame splice site in the 3' coding region compared to variant 1. It encodes isoform b which is shorter than isoform a.
    Source sequence(s)
    AK134241, AK161063, BY004586
    Consensus CDS
    CCDS71308.1
    UniProtKB/Swiss-Prot
    Q3UZ01
    Related
    ENSMUSP00000102145, OTTMUSP00000025419, ENSMUST00000106535, OTTMUST00000053460
    Conserved Domains (3) summary
    smart00360
    Location:2897
    RRM; RNA recognition motif
    cd12238
    Location:28100
    RRM1_RBM40_like; RNA recognition motif 1 in RNA-binding protein 40 (RBM40) and similar proteins
    cd12239
    Location:417496
    RRM2_RBM40_like; RNA recognition motif 2 in RNA-binding protein 40 (RBM40) and similar proteins
  3. NM_026043.3NP_080319.2  RNA-binding protein 40 isoform a

    See identical proteins and their annotated locations for NP_080319.2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 3' UTR compared to variant 1. Variants 1 and 2 encode the same protein (isoform a).
    Source sequence(s)
    AK134241, BC043695, BY004661
    Consensus CDS
    CCDS17777.1
    UniProtKB/Swiss-Prot
    Q3UZ01
    Related
    ENSMUSP00000102146, OTTMUSP00000025420, ENSMUST00000106536, OTTMUST00000053461
    Conserved Domains (3) summary
    smart00360
    Location:2897
    RRM; RNA recognition motif
    cd12238
    Location:28100
    RRM1_RBM40_like; RNA recognition motif 1 in RNA-binding protein 40 (RBM40) and similar proteins
    cd12239
    Location:417499
    RRM2_RBM40_like; RNA recognition motif 2 in RNA-binding protein 40 (RBM40) and similar proteins

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 105 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p3 C57BL/6J

Genomic

  1. NC_000069.6 Reference GRCm38.p3 C57BL/6J

    Range
    113605067..113630149 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate Mm_Celera

Genomic

  1. AC_000025.1 Alternate Mm_Celera

    Range
    119998383..120023481 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)