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Ccnh cyclin H [ Mus musculus (house mouse) ]

Gene ID: 66671, updated on 21-May-2016
Official Symbol
Ccnhprovided by MGI
Official Full Name
cyclin Hprovided by MGI
Primary source
MGI:MGI:1913921
See related
Ensembl:ENSMUSG00000021548 Vega:OTTMUSG00000035504
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
AI661354; AV102684; AW538719; 6330408H09Rik
Orthologs
Location:
13; 13 C3
Exon count:
9
Annotation release Status Assembly Chr Location
105 current GRCm38.p3 (GCF_000001635.23) 13 NC_000079.6 (85189377..85213726)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 13 NC_000079.5 (85329082..85353328)

Chromosome 13 - NC_000079.6Genomic Context describing neighboring genes Neighboring gene ribosomal protein L13A-like pseudogene Neighboring gene smoothened homolog pseudogene Neighboring gene RAS p21 protein activator 1 Neighboring gene high mobility group box 3 pseudogene

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Products Interactant Other Gene Complex Source Pubs Description

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
contributes_to DNA-dependent ATPase activity ISO
Inferred from Sequence Orthology
more info
 
contributes_to RNA polymerase II carboxy-terminal domain kinase activity ISO
Inferred from Sequence Orthology
more info
 
cyclin-dependent protein serine/threonine kinase activity ISS
Inferred from Sequence or Structural Similarity
more info
PubMed 
cyclin-dependent protein serine/threonine kinase regulator activity IBA
Inferred from Biological aspect of Ancestor
more info
 
kinase activity IDA
Inferred from Direct Assay
more info
PubMed 
Process Evidence Code Pubs
cell cycle IEA
Inferred from Electronic Annotation
more info
 
positive regulation of cyclin-dependent protein serine/threonine kinase activity IBA
Inferred from Biological aspect of Ancestor
more info
 
positive regulation of phosphorylation of RNA polymerase II C-terminal domain IBA
Inferred from Biological aspect of Ancestor
more info
 
positive regulation of transcription from RNA polymerase II promoter IBA
Inferred from Biological aspect of Ancestor
more info
 
positive regulation of transcription from RNA polymerase II promoter ISO
Inferred from Sequence Orthology
more info
 
regulation of transcription, DNA-templated IEA
Inferred from Electronic Annotation
more info
 
transcription from RNA polymerase II promoter ISO
Inferred from Sequence Orthology
more info
 
transcription, DNA-templated IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
TFIIK complex IEA
Inferred from Electronic Annotation
more info
 
cyclin-dependent protein kinase activating kinase holoenzyme complex ISO
Inferred from Sequence Orthology
more info
 
cyclin-dependent protein kinase holoenzyme complex IBA
Inferred from Biological aspect of Ancestor
more info
 
holo TFIIH complex ISO
Inferred from Sequence Orthology
more info
 
nucleoplasm ISO
Inferred from Sequence Orthology
more info
 
nucleus IDA
Inferred from Direct Assay
more info
PubMed 

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_023243.5NP_075732.1  cyclin-H

    See identical proteins and their annotated locations for NP_075732.1

    Status: PROVISIONAL

    Source sequence(s)
    AC154271
    Consensus CDS
    CCDS26666.1
    UniProtKB/Swiss-Prot
    Q61458
    Related
    ENSMUSP00000022030, OTTMUSP00000050004, ENSMUST00000022030, OTTMUST00000090919
    Conserved Domains (2) summary
    TIGR00569
    Location:2308
    ccl1; cyclin ccl1
    cd00043
    Location:58150
    CYCLIN; Cyclin box fold. Protein binding domain functioning in cell-cycle and transcription control. Present in cyclins, TFIIB and Retinoblastoma (RB).The cyclins consist of 8 classes of cell cycle regulators that regulate cyclin dependent kinases (CDKs). TFIIB ...

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 105 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p3 C57BL/6J

Genomic

  1. NC_000079.6 Reference GRCm38.p3 C57BL/6J

    Range
    85189377..85213726
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006517324.2XP_006517387.1  

    UniProtKB/TrEMBL
    E9PWD3
    Related
    ENSMUSP00000129349, OTTMUSP00000050007, ENSMUST00000163600, OTTMUST00000090922
    Conserved Domains (2) summary
    TIGR00569
    Location:2272
    ccl1; cyclin ccl1
    cd00043
    Location:58150
    CYCLIN; Cyclin box fold. Protein binding domain functioning in cell-cycle and transcription control. Present in cyclins, TFIIB and Retinoblastoma (RB).The cyclins consist of 8 classes of cell cycle regulators that regulate cyclin dependent kinases (CDKs). TFIIB ...
  2. XM_006517325.2XP_006517388.1  

    Conserved Domains (1) summary
    TIGR00569
    Location:2213
    ccl1; cyclin ccl1

Alternate Mm_Celera

Genomic

  1. AC_000035.1 Alternate Mm_Celera

    Range
    87421607..87445967
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)