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Vta1 vesicle (multivesicular body) trafficking 1 [ Mus musculus (house mouse) ]

Gene ID: 66201, updated on 8-May-2016
Official Symbol
Vta1provided by MGI
Official Full Name
vesicle (multivesicular body) trafficking 1provided by MGI
Primary source
MGI:MGI:1913451
See related
Ensembl:ENSMUSG00000019868 Vega:OTTMUSG00000031918
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
LIP5; SBP1; C85340; AU040813; 1110001D18Rik; 1110059P08Rik
Orthologs
Location:
10; 10 A2
Exon count:
8
Annotation release Status Assembly Chr Location
105 current GRCm38.p3 (GCF_000001635.23) 10 NC_000076.6 (14654760..14705527, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 10 NC_000076.5 (14375139..14425295, complement)

Chromosome 10 - NC_000076.6Genomic Context describing neighboring genes Neighboring gene predicted gene, 40603 Neighboring gene adhesion G protein-coupled receptor G6 Neighboring gene ribosomal protein L23A pseudogene Neighboring gene RIKEN cDNA 1700016L04 gene Neighboring gene gap junction protein, epsilon 1 Neighboring gene heat shock protein 8 pseudogene

Products Interactant Other Gene Complex Source Pubs Description

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
protein C-terminus binding ISO
Inferred from Sequence Orthology
more info
 
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
multivesicular body sorting pathway ISO
Inferred from Sequence Orthology
more info
 
protein transport IEA
Inferred from Electronic Annotation
more info
 
transport IEA
Inferred from Electronic Annotation
more info
 
viral budding ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
cytoplasm IDA
Inferred from Direct Assay
more info
PubMed 
cytosol ISO
Inferred from Sequence Orthology
more info
 
endosome IEA
Inferred from Electronic Annotation
more info
 
extracellular exosome ISO
Inferred from Sequence Orthology
more info
 
membrane IEA
Inferred from Electronic Annotation
more info
 
Preferred Names
vacuolar protein sorting-associated protein VTA1 homolog
Names
SKD1 binding protein 1
SKD1-binding protein 1
Vps20-associated 1 homolog
lysosomal trafficking regulator interacting protein-5

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_025418.3NP_079694.2  vacuolar protein sorting-associated protein VTA1 homolog

    See identical proteins and their annotated locations for NP_079694.2

    Status: VALIDATED

    Source sequence(s)
    AK002611, BP770041, CX212626
    Consensus CDS
    CCDS23705.1
    UniProtKB/Swiss-Prot
    Q9CR26
    Related
    ENSMUSP00000119829, OTTMUSP00000042172, ENSMUST00000154132, OTTMUST00000079146
    Conserved Domains (1) summary
    pfam04652
    Location:15305
    DUF605; Vta1 like

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 105 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p3 C57BL/6J

Genomic

  1. NC_000076.6 Reference GRCm38.p3 C57BL/6J

    Range
    14654760..14705527 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006512810.2XP_006512873.1  

    Conserved Domains (1) summary
    pfam04652
    Location:15143
    DUF605; Vta1 like
  2. XM_006512809.2XP_006512872.1  

    See identical proteins and their annotated locations for XP_006512872.1

    Related
    ENSMUSP00000118498, OTTMUSP00000042176, ENSMUST00000149485, OTTMUST00000079151
    Conserved Domains (1) summary
    pfam04652
    Location:15276
    DUF605; Vta1 like

RNA

  1. XR_380071.2 RNA Sequence

Alternate Mm_Celera

Genomic

  1. AC_000032.1 Alternate Mm_Celera

    Range
    14558320..14607904 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)