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LOC6615412 mRNA export factor [ Drosophila sechellia ]

Gene ID: 6615412, updated on 14-Dec-2023

Summary

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Gene symbol
LOC6615412
Gene description
mRNA export factor
Locus tag
Dsec_GM15702
See related
EnsemblRapid:LOC6615412
Gene type
protein coding
RefSeq status
MODEL
Organism
Drosophila sechellia
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
GM15702; GM15702-PA
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Genomic context

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Location:
chromosome: 2R
Exon count:
2
Annotation release Status Assembly Chr Location
101 current ASM438219v1 (GCF_004382195.1) 2R NC_045950.1 (17693894..17695146, complement)

Chromosome 2R - NC_045950.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC6615409 Neighboring gene uncharacterized LOC116800515 Neighboring gene protein Aster-A Neighboring gene NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3 Neighboring gene uncharacterized LOC6615413 Neighboring gene uncharacterized LOC116800511 Neighboring gene uncharacterized LOC116800512

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_045950.1 Chromosome 2R Reference ASM438219v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Evolution of genes and genomes on the Drosophila phylogeny. Drosophila 12 Genomes Consortium, et al. Nature, 2007 Nov 8. PMID 17994087

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in RNA export from nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of nuclear pore IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
mRNA export factor
Names
Dsec\GM15702
Dsec\GM15702-PA
dsec_GLEANR_16522

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Drosophila sechellia Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM438219v1

Genomic

  1. NC_045950.1 Reference ASM438219v1

    Range
    17693894..17695146 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002039758.2 → XP_002039794.1  mRNA export factor

    See identical proteins and their annotated locations for XP_002039794.1

    UniProtKB/TrEMBL
    B4I7T4
    Related
    XP_002039794.1, XM_002039758.2
    Conserved Domains (2) summary
    sd00039
    Location:25 → 66
    7WD40; WD40 repeat [structural motif]
    cl29593
    Location:22 → 310
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
Nucleotide Protein Strain
Heading Accession and Version

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