These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in this
section to the one reported in Genomic regions, transcripts, and products above.
mRNA and Protein(s)
-
NM_001130420.1 → NP_001123892.1 SWI/SNF complex subunit SMARCC2 isoform c
Status: REVIEWED
- Description
- Transcript Variant: This variant (3) contains an additional exon in the middle coding region but lacks a segment in the 3' coding region as compared to variant 1. The reading frame is not affected, and isoform c contains an additional small segment in the middle region and lacks a bigger segment in the C-terminal region compared to isoform a.
- Source sequence(s)
-
AB209006, BQ272432, BX476347, CX165574
- Consensus CDS
-
CCDS55835.1
- UniProtKB/TrEMBL
-
F8VTJ5
- UniProtKB/TrEMBL
-
Q59GV3
- Related
- ENSP00000377591, OTTHUMP00000243474, ENST00000394023, OTTHUMT00000408459
- Conserved Domains (4) summary
-
- COG5259
Location:379 – 759
Blast Score: 649
- RSC8; RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
- COG5271
Location:244 – 416
Blast Score: 91
- MDN1; AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
- pfam04433
Location:428 – 512
Blast Score: 351
- SWIRM; SWIRM domain
- cl15261
Location:187 – 222
Blast Score: 98
- CHROMO; Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids found in a variety of chromosomal proteins, which appear to play a role in the functional organization of the eukaryotic nucleus. Experimental evidence ...
-
NM_003075.3 → NP_003066.2 SWI/SNF complex subunit SMARCC2 isoform a
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) is the longest transcript and encodes the longest isoform (a).
- Source sequence(s)
-
AB209006, AK315153, BC009067, BQ272432, BX476347, CX165574
- Consensus CDS
-
CCDS8907.1
- UniProtKB/TrEMBL
-
Q59GV3
- UniProtKB/Swiss-Prot
-
Q8TAQ2
- Related
- ENSP00000267064, OTTHUMP00000243441, ENST00000267064, OTTHUMT00000408370
- Conserved Domains (4) summary
-
- COG5259
Location:379 – 571
Blast Score: 494
- RSC8; RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
- COG5271
Location:244 – 416
Blast Score: 91
- MDN1; AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
- pfam04433
Location:428 – 512
Blast Score: 351
- SWIRM; SWIRM domain
- cl15261
Location:187 – 222
Blast Score: 100
- CHROMO; Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids found in a variety of chromosomal proteins, which appear to play a role in the functional organization of the eukaryotic nucleus. Experimental evidence ...
-
NM_139067.2 → NP_620706.1 SWI/SNF complex subunit SMARCC2 isoform b
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) contains an additional exon in the middle coding region but lacks a segment in the 3' coding region as compared to variant 1. The reading frame is not affected, and isoform b contains an additional small segment in the middle region and lacks a big segment in the C-terminal region compared to isoform a.
- Source sequence(s)
-
AB209006, BQ272432, BX476347, CX165574
- Consensus CDS
-
CCDS8908.1
- UniProtKB/TrEMBL
-
Q59GV3
- Related
- ENSP00000302919, OTTHUMP00000243447, ENST00000347471, OTTHUMT00000408379
- Conserved Domains (4) summary
-
- COG5259
Location:379 – 759
Blast Score: 646
- RSC8; RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
- COG5271
Location:244 – 416
Blast Score: 90
- MDN1; AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
- pfam04433
Location:428 – 512
Blast Score: 350
- SWIRM; SWIRM domain
- cl15261
Location:187 – 222
Blast Score: 98
- CHROMO; Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids found in a variety of chromosomal proteins, which appear to play a role in the functional organization of the eukaryotic nucleus. Experimental evidence ...
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as RefSeqs
for chromosomes and scaffolds (contigs) from both reference and alternate assemblies.
Model RNAs and proteins are also reported here.
Reference GRCh37.p5 Primary Assembly
Genomic
-
NC_000012.11 Reference GRCh37.p5 Primary Assembly
- Range
- 56555636..56583351, complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
Alternate HuRef
Genomic
-
AC_000144.1 Alternate HuRef
- Range
- 53594695..53620204, complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)