These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in this
section to the one reported in Genomic regions, transcripts, and products above.
Genomic
-
NG_032162.1 RefSeqGene
- Range
- 5001..183283
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
NM_003070.3 → NP_003061.3 probable global transcription activator SNF2L2 isoform a
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) encodes the longer isoform (a).
- Source sequence(s)
-
AK094076, AL558829, BC040029, BC066596, BC068252, X72889
- Consensus CDS
-
CCDS34977.1
- UniProtKB/Swiss-Prot
-
P51531
- UniProtKB/TrEMBL
-
Q56A76
- UniProtKB/TrEMBL
-
Q8N9Q1
- Related
- ENSP00000265773, ENST00000349721
- Conserved Domains (7) summary
-
- cd00046
Location:744 – 883
Blast Score: 225
- DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
- cd00079
Location:1040 – 1172
Blast Score: 244
- HELICc; Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may ...
- cd05516
Location:1382 – 1506
Blast Score: 474
- Bromo_SNF2L2; Bromodomain, SNF2L2-like subfamily, specific to animals. SNF2L2 (SNF2-alpha) or SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2 is a global transcriptional activator, which cooperates with nuclear hormone ...
- pfam00176
Location:727 – 1022
Blast Score: 954
- SNF2_N; SNF2 family N-terminal domain
- cl02676
Location:451 – 508
Blast Score: 181
- HSA; HSA
- cl02688
Location:588 – 632
Blast Score: 173
- BRK; BRK domain
- cl07469
Location:172 – 208
Blast Score: 149
- QLQ; QLQ
-
NM_139045.2 → NP_620614.2 probable global transcription activator SNF2L2 isoform b
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) lacks an alternate in-frame exon in the coding region, compared to variant 1, resulting in a shorter protein (isoform 2).
- Source sequence(s)
-
AK094076, BC040029, BC066596, BC068252, X72889
- Consensus CDS
-
CCDS34978.1
- UniProtKB/Swiss-Prot
-
P51531
- UniProtKB/TrEMBL
-
Q56A76
- UniProtKB/TrEMBL
-
Q8N9Q1
- Related
- ENSP00000349788, ENST00000357248
- Conserved Domains (7) summary
-
- cd00046
Location:744 – 883
Blast Score: 224
- DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
- cd00079
Location:1040 – 1172
Blast Score: 244
- HELICc; Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may ...
- cd05516
Location:1382 – 1488
Blast Score: 502
- Bromo_SNF2L2; Bromodomain, SNF2L2-like subfamily, specific to animals. SNF2L2 (SNF2-alpha) or SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2 is a global transcriptional activator, which cooperates with nuclear hormone ...
- pfam00176
Location:727 – 1022
Blast Score: 954
- SNF2_N; SNF2 family N-terminal domain
- cl02676
Location:451 – 508
Blast Score: 180
- HSA; HSA
- cl02688
Location:588 – 632
Blast Score: 173
- BRK; BRK domain
- cl07469
Location:172 – 208
Blast Score: 149
- QLQ; QLQ
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as RefSeqs
for chromosomes and scaffolds (contigs) from both reference and alternate assemblies.
Model RNAs and proteins are also reported here.
Reference GRCh37.p5 Primary Assembly
Genomic
-
NC_000009.11 Reference GRCh37.p5 Primary Assembly
- Range
- 2015342..2193624
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
Alternate HuRef
Genomic
-
AC_000141.1 Alternate HuRef
- Range
- 1969240..2147484
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)