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LOC6570537 1,4-alpha-glucan-branching enzyme [ Drosophila grimshawi ]

Gene ID: 6570537, updated on 7-Dec-2023

Summary

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Gene symbol
LOC6570537
Gene description
1,4-alpha-glucan-branching enzyme
Locus tag
Dgri_GH24987
See related
EnsemblRapid:LOC6570537
Gene type
protein coding
RefSeq status
MODEL
Organism
Drosophila grimshawi
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Hawaiian Drosophila
Also known as
GH24987; GH24987-PA
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Genomic context

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Location:
chromosome: Un
Exon count:
4
Annotation release Status Assembly Chr Location
103 current ASM1815329v1 (GCF_018153295.1) Unplaced Scaffold NW_025062889.1 (3602637..3605848)
102 previous assembly dgri_caf1 (GCF_000005155.2) Unplaced Scaffold NW_001961750.1 (3082..6293)

NW_025062889.1Genomic Context describing neighboring genes Neighboring gene thioredoxin-related transmembrane protein 1 Neighboring gene U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein Neighboring gene eukaryotic translation initiation factor 6 Neighboring gene putative uncharacterized protein DDB_G0271606 Neighboring gene putative uncharacterized protein DDB_G0271606

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Evolution of genes and genomes on the Drosophila phylogeny. Drosophila 12 Genomes Consortium, et al. Nature, 2007 Nov 8. PMID 17994087

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 1,4-alpha-glucan branching enzyme activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cation binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables hydrolase activity, hydrolyzing O-glycosyl compounds IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glycogen biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
1,4-alpha-glucan-branching enzyme
Names
Dgri\GH24987
Dgri\GH24987-PA
dgri_GLEANR_962

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Drosophila grimshawi Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1815329v1

Genomic

  1. NW_025062889.1 Reference ASM1815329v1

    Range
    3602637..3605848
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001996726.2 → XP_001996762.1  1,4-alpha-glucan-branching enzyme

    See identical proteins and their annotated locations for XP_001996762.1

    UniProtKB/TrEMBL
    B4K0F8
    Related
    XP_001996762.1, XM_001996726.2
    Conserved Domains (4) summary
    cd02854
    Location:67 → 166
    E_set_GBE_euk_N; N-terminal Early set domain associated with the catalytic domain of eukaryotic glycogen branching enzyme (also called 1,4 alpha glucan branching enzyme)
    cd11321
    Location:171 → 575
    AmyAc_bac_euk_BE; Alpha amylase catalytic domain found in bacterial and eukaryotic branching enzymes
    COG0296
    Location:57 → 687
    GlgB; 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
    pfam02806
    Location:593 → 687
    Alpha-amylase_C; Alpha amylase, C-terminal all-beta domain
Nucleotide Protein
Heading Accession and Version

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