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LOC6535486 transcription factor Ouib [ Drosophila yakuba ]

Gene ID: 6535486, updated on 7-Dec-2023

Summary

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Gene symbol
LOC6535486
Gene description
transcription factor Ouib
Locus tag
Dyak_GE25245
See related
EnsemblRapid:LOC6535486
Gene type
protein coding
RefSeq status
MODEL
Organism
Drosophila yakuba
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
GE25245; GE25245-PA
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Genomic context

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Location:
chromosome: 3R
Exon count:
3
Annotation release Status Assembly Chr Location
102 current Prin_Dyak_Tai18E2_2.1 (GCF_016746365.2) 3R NC_052530.2 (4235108..4236650, complement)
101 previous assembly Prin_Dyak_Tai18E2_2.0 (GCF_016746365.1) 3R NC_052530.1 (4235174..4236722, complement)

Chromosome 3R - NC_052530.2Genomic Context describing neighboring genes Neighboring gene inhibitor of growth protein 1 Neighboring gene zinc finger protein 26 Neighboring gene transcription factor Ouib Neighboring gene zinc finger protein with KRAB and SCAN domains 7

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Evolution of genes and genomes on the Drosophila phylogeny. Drosophila 12 Genomes Consortium, et al. Nature, 2007 Nov 8. PMID 17994087

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor Ouib
Names
Dyak\GE25245
Dyak\GE25245-PA
dyak_GLEANR_8869

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Drosophila yakuba Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Prin_Dyak_Tai18E2_2.1 Primary Assembly

Genomic

  1. NC_052530.2 Reference Prin_Dyak_Tai18E2_2.1 Primary Assembly

    Range
    4235108..4236650 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002096081.4 → XP_002096117.1  transcription factor Ouib

    See identical proteins and their annotated locations for XP_002096117.1

    UniProtKB/TrEMBL
    B4PKJ0
    Related
    XP_002096117.1, XM_002096081.4
    Conserved Domains (4) summary
    smart00451
    Location:394 → 426
    ZnF_U1; U1-like zinc finger
    sd00017
    Location:281 → 301
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:279 → 301
    zf-C2H2; Zinc finger, C2H2 type
    pfam07776
    Location:4 → 75
    zf-AD; Zinc-finger associated domain (zf-AD)
Nucleotide Protein Strain
Heading Accession and Version

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