These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in this
section to the one reported in Genomic regions, transcripts, and products above.
mRNA and Protein(s)
-
NM_001097604.2 → NP_001091073.2 G antigen family D member 2 isoform a
Status: REVIEWED
- Description
- Transcript Variant: This variant (a, also known as XAGE-1a) encodes the longer isoform (a, also known as isoform XAGE-1b). This variant also includes a major downstream transcription start site, which results in the variant referred to as XAGE-1b in the literature. Both XAGE-1a and XAGE-1b encode the same isoform.
- Source sequence(s)
-
AL772246
- Consensus CDS
-
CCDS48126.2
- UniProtKB/Swiss-Prot
-
Q9HD64
- Related
- ENSP00000364720, OTTHUMP00000023316, ENST00000375570, OTTHUMT00000056664
- Conserved Domains (1) summary
-
- pfam05831
Location:55 – 81
Blast Score: 81
- GAGE; GAGE protein
-
NM_001097605.2 → NP_001091074.1 G antigen family D member 2 isoform d
Status: REVIEWED
- Description
- Transcript Variant: This variant (d, also known as XAGE-1d) starts at a downstream transcription start site, and uses an alternate splice site in an internal exon that causes a frameshift in the 3' coding region, compared to variant a. The encoded isoform (d) has a distinct and shorter C-terminus, compared to isoform a.
- Source sequence(s)
-
AL772246
- Consensus CDS
-
CCDS48128.1
- UniProtKB/Swiss-Prot
-
Q9HD64
- Related
- ENSP00000364717, OTTHUMP00000042369, ENST00000375567, OTTHUMT00000056665
RNA
-
NR_033257.1 RNA Sequence
- Description
- Transcript Variant: This variant (c, also known as XAGE-1c) differs in the 5'-most exon, compared to variant a. This variant is represented as non-coding due to the presence of two upstream ORFs that inhibit translation of the primary ORF, as indicated by experimental evidence in PMID:17335148.
- Source sequence(s)
-
AL772246
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as RefSeqs
for chromosomes and scaffolds (contigs) from both reference and alternate assemblies.
Model RNAs and proteins are also reported here.
Reference GRCh37.p5 Primary Assembly
Genomic
-
NC_000023.10 Reference GRCh37.p5 Primary Assembly
- Range
- 52541053..52546197, complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
Alternate HuRef
Genomic
-
NW_001841599.1 Alternate HuRef
- Range
- 962..6106
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
The following Reference Sequences have been suppressed. Explain
These RefSeqs were suppressed for the cited
reason(s). Suppressed RefSeqs do not appear in BLAST databases, related sequence links,
or BLAST links (BLink), but may still be retrieved by clicking on their
accession.version below.
-
NM_001097603.1: Suppressed sequence
- Description
- NM_001097603.1: This RefSeq was permanently suppressed because currently there is support for the transcript but not for the protein.