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    SKI v-ski sarcoma viral oncogene homolog (avian) [ Homo sapiens (human) ]

    Gene ID: 6497, updated on 15-Jun-2013
    Official Symbol
    SKIprovided by HGNC
    Official Full Name
    v-ski sarcoma viral oncogene homolog (avian)provided by HGNC
    Primary source
    HGNC:10896
    See related
    Ensembl:ENSG00000157933; HPRD:01271; MIM:164780; Vega:OTTHUMG00000001407
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    SGS; SKV
    Summary
    This gene encodes the nuclear protooncogene protein homolog of avian sarcoma viral (v-ski) oncogene. It functions as a repressor of TGF-beta signaling, and may play a role in neural tube development and muscle differentiation. [provided by RefSeq, Oct 2009]
    Location :
    1p36.33
    Sequence :
    Chromosome: 1; NC_000001.10 (2160134..2241652)

    Chromosome 1 - NC_000001.10Genomic Context describing neighboring genes Neighboring gene protein kinase C, zeta Neighboring gene uncharacterized LOC100506504 Neighboring gene chromosome 1 open reading frame 86 Neighboring gene small nuclear ribonucleoprotein polypeptide N pseudogene Neighboring gene MORN repeat containing 1 Neighboring gene RER1 retention in endoplasmic reticulum 1 homolog (S. cerevisiae) Neighboring gene peroxisomal biogenesis factor 10

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Shprintzen-Goldberg syndrome

    Summary from GeneReviews: Shprintzen-Goldberg Syndrome Go to GeneReviews

    Disease Characteristics
    Shprintzen-Goldberg syndrome (SGS) is characterized by craniosynostosis (involving the coronal, sagittal, or lambdoid sutures), distinctive craniofacial features, skeletal changes (dolichostenomelia, arachnodactyly, camptodactyly, pes planus, pectus excavatum or carinatum, scoliosis, joint hypermobility, or contractures), neurologic abnormalities, mild-to-moderate intellectual disability, and brain anomalies (hydrocephalus, dilatation of the lateral ventricles, and Chiari 1 malformation). Cardiovascular anomalies (mitral valve prolapse, mitral regurgitation, and aortic regurgitation) may occur, but aortic root dilatation is most likely not found. Minimal subcutaneous fat, abdominal wall defects, cryptorchidism in males, and myopia are also characteristic findings.
    Diagnosis Testing
    The diagnosis of SGS is suspected in individuals with characteristic clinical findings and radiographic findings showing C1-C2 abnormality, wide anterior fontanel, thin ribs, 13 pairs of ribs, square-shaped vertebral bodies, and osteopenia. The gene in which SGS-causing mutations occur is unknown.
    Genetic Counseling
    The mode of inheritance of SGS is unknown. Familial recurrences are rare. Germline mosaicism for a new autosomal dominant mutation, autosomal recessive inheritance, or a cryptic structural abnormality of a chromosome may explain familial recurrence with unaffected parents. The risk to sibs of a proband is small, but greater than that of the general population. To date, all offspring of individuals diagnosed with Shprintzen-Goldberg syndrome have been unaffected. Prenatal diagnosis is not possible at this time.
    References
    Products Interactant Other Gene Complex Source Pubs Description
    NP_003027.1 NP_003027.1 SKI    BIND  PubMed c-Ski homodimerizes with itself. 
    NP_003027.1 NP_005892.1 SMAD2    BIND  PubMed c-Ski interacts with Smad2. This interaction was modeled on a demonstrated interaction between Smad2 from an unspecified source and human c-Ski. 
    NP_003027.1 NP_005893.1 SMAD3    BIND  PubMed c-Ski interacts with Smad3. This interaction was modeled on a demonstrated interaction between Smad3 from an unspecified source and human c-Ski. 
    NP_003027.1 NP_005350.1 SMAD4    BIND  PubMed c-Ski interacts with Smad4. This interaction was modelled on a demonstrated interaction between Smad4 from an unspecified source and human c-Ski. 
    NP_003027.1 NP_005350.1 SMAD4    BIND  PubMed Smad4 interacts with Ski. This interaction was modeled on a demonstrated interaction between human Smad4 and Ski from an unspecified species. 
    NP_003027.1 NP_006073.2 TUBA1B    BIND  PubMed Ski interacts with alpha-tubulin. 
    P12755 P10070 GLI2    HPRD  PubMed  
    P12755 P10071 GLI3    HPRD  PubMed  
    P12755 Q9H2X6 HIPK2    HPRD  PubMed  
    P12755 P05412 JUN    HPRD  PubMed  
    P12755 P51608 MECP2    HPRD  PubMed  
    P12755 O75376 NCOR1    HPRD  PubMed  
    P12755 Q14938 NFIX    HPRD  PubMed  
    P12755 P29590 PML    HPRD  PubMed  
    P12755 Q96ST3 SIN3A    HPRD  PubMed  
    P12755 P12755 SKI    HPRD  PubMed  
    P12755 P12757 SKIL    HPRD  PubMed  
    P12755 Q15796 SMAD2    HPRD  PubMed  
    P12755 P84022 SMAD3    HPRD  PubMed  
    P12755 Q13485 SMAD4    HPRD  PubMed  
    P12755 Q13573 SNW1    HPRD  PubMed  
    BioGRID:112388 BioGRID:106710 AKT1    BioGRID  PubMed Affinity Capture-Western; Biochemical Activity 
    BioGRID:112388 BioGRID:106711 AKT2    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:112388 BioGRID:113909 AXIN1    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:112388 BioGRID:107434 CDH1    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:112388 BioGRID:108403 ESR1    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:112388 BioGRID:108441 EYA3    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:112388 BioGRID:108893 GATA1    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:112388 BioGRID:108998 GLI2    BioGRID  PubMed Reconstituted Complex; Two-hybrid 
    BioGRID:112388 BioGRID:108999 GLI3    BioGRID  PubMed Affinity Capture-Western; Reconstituted Complex; Two-hybrid 
    BioGRID:112388 BioGRID:114368 HDAC3    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:112388 BioGRID:118815 HIPK2    BioGRID  PubMed Affinity Capture-Western; Reconstituted Complex 
    BioGRID:112388 BioGRID:109928 JUN    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:112388 BioGRID:110368 MECP2    BioGRID  PubMed Affinity Capture-Western; Reconstituted Complex 
    BioGRID:112388 BioGRID:110687 MYB    BioGRID  PubMed Affinity Capture-Western; Reconstituted Complex 
    BioGRID:112388 BioGRID:114973 NCOR1    BioGRID  PubMed Affinity Capture-Western; Reconstituted Complex 
    BioGRID:112388 BioGRID:110856 NFIX    BioGRID  PubMed Phenotypic Enhancement; Reconstituted Complex 
    BioGRID:112388 BioGRID:111384 PML    BioGRID  PubMed Affinity Capture-Western; Reconstituted Complex 
    BioGRID:112388 BioGRID:122023 PRDM16    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:112388 BioGRID:115688 PRMT5    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:112388 BioGRID:111849 RARA    BioGRID  PubMed Affinity Capture-Western; Co-localization 
    BioGRID:112388 BioGRID:111860 RB1    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:112388 BioGRID:115160 RB1CC1    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:112388 BioGRID:120146 RNF111    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:112388 BioGRID:112373 SIAH2    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:112388 BioGRID:117439 SIN3A    BioGRID  PubMed Affinity Capture-Western; Reconstituted Complex 
    BioGRID:112388 BioGRID:116983 SIRT1    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:112388 BioGRID:112386 SIX1    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:112388 BioGRID:112388 SKI    BioGRID  PubMed Reconstituted Complex 
    BioGRID:112388 BioGRID:112389 SKIL    BioGRID  PubMed Affinity Capture-Western; Co-localization; Reconstituted Complex 
    BioGRID:112388 BioGRID:110261 SMAD1    BioGRID  PubMed Affinity Capture-Western; Reconstituted Complex 
    BioGRID:112388 BioGRID:110262 SMAD2    BioGRID  PubMed Affinity Capture-MS; Affinity Capture-Western; Reconstituted Complex; Two-hybrid 
    BioGRID:112388 BioGRID:110263 SMAD3    BioGRID  PubMed Affinity Capture-Western; Reconstituted Complex 
    BioGRID:112388 BioGRID:110264 SMAD4    BioGRID  PubMed Affinity Capture-Luminescence; Affinity Capture-MS; Affinity Capture-Western; Co-crystal Structure; Reconstituted Complex; Two-hybrid 
    BioGRID:112388 BioGRID:110265 SMAD5    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:112388 BioGRID:121411 SMURF1    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:112388 BioGRID:116597 SNW1    BioGRID  PubMed Affinity Capture-Western; Phenotypic Suppression; Reconstituted Complex; Two-hybrid 
    BioGRID:112388 BioGRID:112566 SPI1    BioGRID  PubMed Affinity Capture-Western; Reconstituted Complex 
    BioGRID:112388 BioGRID:122834 TBL1XR1    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:112388 BioGRID:112904 TGFBR1    BioGRID  PubMed Affinity Capture-Western; Reconstituted Complex 
    BioGRID:112388 BioGRID:113010 TP53    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:112388 BioGRID:115457 TRIM28    BioGRID  PubMed Reconstituted Complex 
    BioGRID:112388 BioGRID:113164 UBC    BioGRID  PubMed Affinity Capture-MS; Affinity Capture-Western 
    BioGRID:112388 BioGRID:113177 UBE2I    BioGRID  PubMed Affinity Capture-Western; Reconstituted Complex 
    • BMP Signalling Pathway, organism-specific biosystem (from BIOCYC)
      BMP Signalling Pathway, organism-specific biosystemThe TGF-beta/BMP (bone morphogenetic protein) pathway incorporates several signalling pathways that share most, but not all, components of a central signal transduction engine. The general signalling...
    • BMP receptor signaling, organism-specific biosystem (from Pathway Interaction Database)
      BMP receptor signaling, organism-specific biosystem
      BMP receptor signaling
    • C-MYB transcription factor network, organism-specific biosystem (from Pathway Interaction Database)
      C-MYB transcription factor network, organism-specific biosystem
      C-MYB transcription factor network
    • Downregulation of SMAD2/3:SMAD4 transcriptional activity, organism-specific biosystem (from REACTOME)
      Downregulation of SMAD2/3:SMAD4 transcriptional activity, organism-specific biosystemTranscriptional activity of SMAD2/3:SMAD4 heterotrimer can be inhibited by formation of a complex with SKI or SKIL (SNO), where SKI or SKIL recruit NCOR and possibly other transcriptional repressors ...
    • Gene Expression, organism-specific biosystem (from REACTOME)
      Gene Expression, organism-specific biosystemGene Expression covers the pathways by which genomic DNA is transcribed to yield RNA, the regulation of these transcription processes, and the pathways by which newly-made RNA Transcripts are process...
    • Generic Transcription Pathway, organism-specific biosystem (from REACTOME)
      Generic Transcription Pathway, organism-specific biosystemOVERVIEW OF TRANSCRIPTION REGULATION: Detailed studies of gene transcription regulation in a wide variety of eukaryotic systems has revealed the general principles and mechanisms by which cell- or t...
    • Hedgehog Signaling Pathway, organism-specific biosystem (from WikiPathways)
      Hedgehog Signaling Pathway, organism-specific biosystemThe Hedgehog proteins are a family of secreted ligands that include sonic hedgehog, Indian hedgehog and desert hedgehog in humans. Binding of Hedgehog ligands to their receptors, Patched 1 and 2, pre...
    • Regulation of nuclear SMAD2/3 signaling, organism-specific biosystem (from Pathway Interaction Database)
      Regulation of nuclear SMAD2/3 signaling, organism-specific biosystem
      Regulation of nuclear SMAD2/3 signaling
    • Signal Transduction, organism-specific biosystem (from REACTOME)
      Signal Transduction, organism-specific biosystemSignal transduction is a process in which extracellular signals elicit changes in cell state and activity. Transmembrane receptors sense changes in the cellular environment by binding ligands, such a...
    • Signaling by BMP, organism-specific biosystem (from REACTOME)
      Signaling by BMP, organism-specific biosystemThe TGF-beta/BMP (bone morphogenetic protein) pathway incorporates several signalling pathways that share most, but not all, components of a central signal transduction engine. The general signalling...
    • Signaling by TGF-beta Receptor Complex, organism-specific biosystem (from REACTOME)
      Signaling by TGF-beta Receptor Complex, organism-specific biosystemThe TGF-beta/BMP pathway incorporates several signaling pathways that share most, but not all, components of a central signal transduction engine. The general signaling scheme is rather simple: upon ...
    • TGF Beta Signaling Pathway, organism-specific biosystem (from WikiPathways)
      TGF Beta Signaling Pathway, organism-specific biosystemThe Transforming growth factor beta (TGFβ) signaling pathway is involved in many cellular processes in both the adult organism and the developing embryo including cell growth, cell differentiat...
    • TGF-beta Receptor Signaling Pathway, organism-specific biosystem (from WikiPathways)
      TGF-beta Receptor Signaling Pathway, organism-specific biosystem"The TGF beta receptors TGFBR1 and TGFBR2 belong to a subfamily of membrane-bound serine/threonine kinases which are designated as Type I or II based on their structural and functional properties. Th...
    • Transcriptional activity of SMAD2/SMAD3:SMAD4 heterotrimer, organism-specific biosystem (from REACTOME)
      Transcriptional activity of SMAD2/SMAD3:SMAD4 heterotrimer, organism-specific biosystemIn the nucleus, SMAD2/3:SMAD4 heterotrimer complex acts as a transcriptional regulator. The activity of SMAD2/3 complex is regulated both positively and negatively by association with other transcrip...

    Markers

    Homology

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    SMAD binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    chromatin binding IEA
    Inferred from Electronic Annotation
    more info
     
    histone deacetylase inhibitor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    nucleotide binding IEA
    Inferred from Electronic Annotation
    more info
     
    protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    protein domain specific binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    protein kinase binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    repressing transcription factor binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    transcription corepressor activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    transcription corepressor activity IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    ubiquitin protein ligase binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    zinc ion binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    Process Evidence Code Pubs
    BMP signaling pathway TAS
    Traceable Author Statement
    more info
     
    SMAD protein signal transduction IDA
    Inferred from Direct Assay
    more info
    PubMed 
    anterior/posterior axis specification ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    bone morphogenesis ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    camera-type eye development ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    camera-type eye morphogenesis ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    cell motility NAS
    Non-traceable Author Statement
    more info
    PubMed 
    cell proliferation NAS
    Non-traceable Author Statement
    more info
    PubMed 
    embryonic limb morphogenesis ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    face morphogenesis ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    gene expression TAS
    Traceable Author Statement
    more info
     
    lens morphogenesis in camera-type eye ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    myelination in peripheral nervous system ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    myotube differentiation IDA
    Inferred from Direct Assay
    more info
    PubMed 
    negative regulation of BMP signaling pathway IDA
    Inferred from Direct Assay
    more info
    PubMed 
    negative regulation of BMP signaling pathway IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    negative regulation of Schwann cell proliferation IGI
    Inferred from Genetic Interaction
    more info
    PubMed 
    negative regulation of activin receptor signaling pathway IDA
    Inferred from Direct Assay
    more info
    PubMed 
    negative regulation of cell proliferation IDA
    Inferred from Direct Assay
    more info
    PubMed 
    negative regulation of fibroblast proliferation ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    negative regulation of osteoblast differentiation IDA
    Inferred from Direct Assay
    more info
    PubMed 
    negative regulation of transcription from RNA polymerase II promoter IDA
    Inferred from Direct Assay
    more info
    PubMed 
    negative regulation of transcription from RNA polymerase II promoter IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    negative regulation of transcription from RNA polymerase II promoter TAS
    Traceable Author Statement
    more info
     
    negative regulation of transforming growth factor beta receptor signaling pathway IDA
    Inferred from Direct Assay
    more info
    PubMed 
    negative regulation of transforming growth factor beta receptor signaling pathway IGI
    Inferred from Genetic Interaction
    more info
    PubMed 
    negative regulation of transforming growth factor beta receptor signaling pathway IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    neural tube closure ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    nose morphogenesis ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    olfactory bulb development ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    palate development ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    positive regulation of DNA binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    positive regulation of Wnt receptor signaling pathway NAS
    Non-traceable Author Statement
    more info
    PubMed 
    positive regulation of transcription from RNA polymerase II promoter ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    protein homotrimerization IDA
    Inferred from Direct Assay
    more info
    PubMed 
    regulation of apoptotic process IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    regulation of apoptotic process ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    retina development in camera-type eye ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    skeletal muscle fiber development ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    somatic stem cell maintenance ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    transcription initiation from RNA polymerase II promoter TAS
    Traceable Author Statement
    more info
     
    transcription, DNA-dependent ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    transcription, DNA-dependent TAS
    Traceable Author Statement
    more info
     
    transforming growth factor beta receptor signaling pathway NAS
    Non-traceable Author Statement
    more info
    PubMed 
    transforming growth factor beta receptor signaling pathway TAS
    Traceable Author Statement
    more info
     
    Component Evidence Code Pubs
    PML body IDA
    Inferred from Direct Assay
    more info
    PubMed 
    cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    cytoplasm ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    nuclear body IDA
    Inferred from Direct Assay
    more info
    PubMed 
    nucleoplasm TAS
    Traceable Author Statement
    more info
     
    nucleus IDA
    Inferred from Direct Assay
    more info
    PubMed 
    transcription factor complex ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    transcriptional repressor complex ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    Preferred Names
    ski oncogene
    Names
    ski oncogene
    ski oncoprotein
    proto-oncogene c-Ski

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_013084.1 RefSeqGene

      Range
      5001..86519
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_003036.3NP_003027.1  ski oncogene

      Status: REVIEWED

      Source sequence(s)
      AL590822, X15218
      Consensus CDS
      CCDS39.1
      UniProtKB/Swiss-Prot
      P12755
      Related
      ENSP00000367797, OTTHUMP00000001507, ENST00000378536, OTTHUMT00000004070
      Conserved Domains (3) summary
      pfam02437
      Location:96192
      Blast Score: 426
      Ski_Sno; SKI/SNO/DAC family
      pfam08782
      Location:219312
      Blast Score: 486
      c-SKI_SMAD_bind; c-SKI Smad4 binding domain
      cl12013
      Location:543605
      Blast Score: 89
      BAR; The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature

    RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 104

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh37.p10 Primary Assembly

    Genomic

    1. NC_000001.10 Reference GRCh37.p10 Primary Assembly

      Range
      2160134..2241652
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate HuRef

    Genomic

    1. AC_000133.1 Alternate HuRef

      Range
      1435430..1516081
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate CHM1_1.0

    Genomic

    1. NC_018912.1 Alternate CHM1_1.0

      Range
      2140695..2221060
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

      Supplemental Content

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