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    PORCN porcupine homolog (Drosophila) [ Homo sapiens (human) ]

    Gene ID: 64840, updated on 6-Jun-2013
    Official Symbol
    PORCNprovided by HGNC
    Official Full Name
    porcupine homolog (Drosophila)provided by HGNC
    Primary source
    HGNC:17652
    See related
    Ensembl:ENSG00000102312; HPRD:06680; MIM:300651; Vega:OTTHUMG00000024116
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    PPN; por; DHOF; FODH; MG61; PORC
    Summary
    This gene belongs to the evolutionarily conserved porcupine (Porc) gene family. Genes of the Porc family encode endoplasmic reticulum proteins with multiple transmembrane domains. Porcupine proteins are involved in the processing of Wnt (wingless and int homologue) proteins. Multiple alternatively spliced transcript variants encoding distinct isoforms have been observed. [provided by RefSeq, Jul 2008]
    Location :
    Xp11.23
    Sequence :
    Chromosome: X; NC_000023.10 (48367371..48379202)
    See PORCN in Epigenomics, MapViewer

    Chromosome X - NC_000023.10Genomic Context describing neighboring genes Neighboring gene solute carrier family 38, member 5 Neighboring gene FtsJ RNA methyltransferase homolog 1 (E. coli) Neighboring gene emopamil binding protein (sterol isomerase) Neighboring gene TBC1 domain family, member 25

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Focal dermal hypoplasia

    Summary from GeneReviews: Focal Dermal Hypoplasia Go to GeneReviews

    Disease Characteristics
    Focal dermal hypoplasia is a multisystem disorder characterized primarily by involvement of the skin, skeletal system, eyes, and face. Skin manifestations present at birth include atrophic and hypoplastic areas of skin; cutis aplasia; fat nodules in the dermis manifesting as soft, yellow-pink cutaneous nodules; and pigmentary changes. Verrucoid papillomas of the skin and mucous membranes may appear later. The nails can be ridged, dysplastic, or hypoplastic; hair can be sparse or absent. Limb malformations include oligo/syndactyly and split hand/foot. Developmental abnormalities of the eye can include anophthalmia/microphthalmia, iris and chorioretinal coloboma, and lacrimal duct abnormalities. Craniofacial findings can include facial asymmetry, notched alae nasi, cleft lip and palate, and pointed chin. Occasional findings include dental anomalies, abdominal wall defects, diaphragmatic hernia, and renal anomalies. Psychomotor development is usually normal; some individuals have cognitive impairment.
    Diagnosis Testing
    Diagnosis is based on clinical findings and molecular genetic testing. PORCN is the only gene in which mutations are known to cause focal dermal hypoplasia.
    Genetic Counseling
    Focal dermal hypoplasia is inherited in an X-linked dominant manner. Females (90% of affected individuals) are heterozygous or mosaic for mutations in PORCN; live-born affected males (10% of affected individuals) are mosaic for mutations in PORCN. It is presumed that non-mosaic hemizygous males are not viable. Approximately 95% of females with focal dermal hypoplasia have a new gene mutation; approximately 5% inherited the mutation from a parent. The risk that the mutant PORCN allele will be transmitted by an affected female with a heterozygous mutation is 50%; however, most male conceptuses with the mutant PORCN allele are presumed to be spontaneously aborted. Thus, at delivery the expected sex ratio of offspring is: 33% unaffected females; 33% affected females; 33% unaffected males. If the affected female has a mosaic mutation, the risk to her female offspring of inheriting the mutation is as high as 50%, depending on the level of mosaicism in her germline. Prenatal molecular genetic testing is possible for pregnancies at increased risk if the disease-causing mutation in the family has been identified.
    References
    Products Interactant Other Gene Complex Source Pubs Description
    Q9H237 P04628 WNT1    HPRD  PubMed  
    Q9H237 P56704 WNT3A    HPRD  PubMed  
    Q9H237 P56705 WNT4    HPRD  PubMed  
    Q9H237 Q9H1J7 WNT5B    HPRD  PubMed  
    Q9H237 Q9Y6F9 WNT6    HPRD  PubMed  
    Q9H237 P56706 WNT7B    HPRD  PubMed  
    • Wnt signaling pathway, organism-specific biosystem (from KEGG)
      Wnt signaling pathway, organism-specific biosystemWnt proteins are secreted morphogens that are required for basic developmental processes, such as cell-fate specification, progenitor-cell proliferation and the control of asymmetric cell division, i...
    • Wnt signaling pathway, conserved biosystem (from KEGG)
      Wnt signaling pathway, conserved biosystemWnt proteins are secreted morphogens that are required for basic developmental processes, such as cell-fate specification, progenitor-cell proliferation and the control of asymmetric cell division, i...

    Markers

    Homology

    Clone Names

    • MGC29687

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    transferase activity, transferring acyl groups IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    Wnt receptor signaling pathway IEA
    Inferred from Electronic Annotation
    more info
     
    glycoprotein metabolic process IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    integral to endoplasmic reticulum membrane IEA
    Inferred from Electronic Annotation
    more info
     
    Preferred Names
    protein-cysteine N-palmitoyltransferase porcupine
    Names
    protein-cysteine N-palmitoyltransferase porcupine
    2410004O13Rik
    probable protein-cysteine N-palmitoyltransferase porcupine

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_009278.1 RefSeqGene

      Range
      5001..16832
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_022825.2NP_073736.2  protein-cysteine N-palmitoyltransferase porcupine isoform A

      Status: REVIEWED

      Description
      Transcript Variant: This variant (A) lacks two in-frame coding exons compared to variant D. The resulting isoform (A) lacks an internal region, compared to the longest isoform (D).
      Source sequence(s)
      AF317061, AL538245, BC019080
      Consensus CDS
      CCDS14296.1
      UniProtKB/Swiss-Prot
      Q9H237
      Related
      ENSP00000354978, OTTHUMP00000216273, ENST00000361988, OTTHUMT00000356989
      Conserved Domains (1) summary
      pfam03062
      Location:115391
      Blast Score: 273
      MBOAT; MBOAT, membrane-bound O-acyltransferase family
    2. NM_203473.1NP_982299.1  protein-cysteine N-palmitoyltransferase porcupine isoform B

      Status: REVIEWED

      Description
      Transcript Variant: This variant (B) lacks an in-frame coding exon compared to variant D. The resulting isoform (B) lacks an internal region, compared to the longest isoform (D).
      Source sequence(s)
      AF317059, AL538245, BC019080, BM543485
      Consensus CDS
      CCDS14297.1
      UniProtKB/Swiss-Prot
      Q9H237
      Related
      ENSP00000348233, OTTHUMP00000025785, ENST00000355961, OTTHUMT00000060708
      Conserved Domains (1) summary
      pfam03062
      Location:115397
      Blast Score: 289
      MBOAT; MBOAT, membrane-bound O-acyltransferase family
    3. NM_203474.1NP_982300.1  protein-cysteine N-palmitoyltransferase porcupine isoform C

      Status: REVIEWED

      Description
      Transcript Variant: This variant (C) lacks an in-frame coding exon compared to variant D. The resulting isoform (C) lacks an internal region, compared to the longest isoform (D).
      Source sequence(s)
      AF317060, AL538245, L08239
      Consensus CDS
      CCDS14298.1
      UniProtKB/Swiss-Prot
      Q9H237
      Related
      ENSP00000347207, ENST00000355092
      Conserved Domains (1) summary
      pfam03062
      Location:115396
      Blast Score: 285
      MBOAT; MBOAT, membrane-bound O-acyltransferase family
    4. NM_203475.1NP_982301.1  protein-cysteine N-palmitoyltransferase porcupine isoform D

      Status: REVIEWED

      Description
      Transcript Variant: This variant (D) encodes the longest isoform (D).
      Source sequence(s)
      AF317061, AL538245, L08239
      Consensus CDS
      CCDS14299.1
      UniProtKB/Swiss-Prot
      Q9H237
      Related
      ENSP00000322304, OTTHUMP00000216274, ENST00000326194, OTTHUMT00000356990
      Conserved Domains (1) summary
      pfam03062
      Location:115402
      Blast Score: 312
      MBOAT; MBOAT, membrane-bound O-acyltransferase family

    RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 104

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh37.p10 PATCHES

    Genomic

    1. NW_004070880.1 Reference GRCh37.p10 PATCHES

      Range
      748412..760243
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCh37.p10 Primary Assembly

    Genomic

    1. NC_000023.10 Reference GRCh37.p10 Primary Assembly

      Range
      48367371..48379202
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate HuRef

    Genomic

    1. AC_000155.1 Alternate HuRef

      Range
      46031046..46042328
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate CHM1_1.0

    Genomic

    1. NC_018934.1 Alternate CHM1_1.0

      Range
      48287413..48299240
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_203476.1: Suppressed sequence

      Description
      NM_203476.1: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript and the protein.

      Supplemental Content

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