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HMGN1P11 high mobility group nucleosome binding domain 1 pseudogene 11 [ Homo sapiens (human) ]

Gene ID: 644534, updated on 10-Oct-2023

Summary

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Official Symbol
HMGN1P11provided by HGNC
Official Full Name
high mobility group nucleosome binding domain 1 pseudogene 11provided by HGNC
Primary source
HGNC:HGNC:39355
See related
AllianceGenome:HGNC:39355
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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Location:
4q13.1
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (62510357..62511569)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (65947875..65949087)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (63376075..63377287)

Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124900921 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21589 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21590 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21591 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21592 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr4:63303986-63305185 Neighboring gene coiled-coil domain containing 65 pseudogene Neighboring gene NANOG hESC enhancer GRCh37_chr4:63381321-63381822 Neighboring gene NANOG hESC enhancer GRCh37_chr4:63396948-63397449 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:63437219-63437720 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:63597696-63598348 Neighboring gene exocyst complex component 5 pseudogene 1 Neighboring gene H3K27ac hESC enhancer GRCh37_chr4:64084881-64085671 Neighboring gene LARP1B pseudogene 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Retroposed copies of the HMG genes: a window to genome dynamics. Strichman-Almashanu LZ, et al. Genome Res, 2003 May. PMID 12727900, Free PMC Article
  2. Toward a complete human genome sequence. Sanger Center, et al. Genome Res, 1998 Nov. PMID 9847074

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_028944.1 

    Range
    101..1313
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

    Range
    62510357..62511569
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060928.1 Alternate T2T-CHM13v2.0

    Range
    65947875..65949087
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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