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    SGCD sarcoglycan, delta (35kDa dystrophin-associated glycoprotein) [ Homo sapiens (human) ]

    Gene ID: 6444, updated on 13-Jun-2013
    Official Symbol
    SGCDprovided by HGNC
    Official Full Name
    sarcoglycan, delta (35kDa dystrophin-associated glycoprotein)provided by HGNC
    Primary source
    HGNC:10807
    See related
    Ensembl:ENSG00000170624; HPRD:03246; MIM:601411; Vega:OTTHUMG00000163445
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    SGD; DAGD; 35DAG; CMD1L; SGCDP; SG-delta
    Summary
    The protein encoded by this gene is one of the four known components of the sarcoglycan complex, which is a subcomplex of the dystrophin-glycoprotein complex (DGC). DGC forms a link between the F-actin cytoskeleton and the extracellular matrix. This protein is expressed most abundantly in skeletal and cardiac muscle. Mutations in this gene have been associated with autosomal recessive limb-girdle muscular dystrophy and dilated cardiomyopathy. Alternatively spliced transcript variants encoding distinct isoforms have been observed for this gene. [provided by RefSeq, Jul 2008]
    Location :
    5q33-q34
    Sequence :
    Chromosome: 5; NC_000005.9 (155753767..156194799)
    See SGCD in Epigenomics, MapViewer

    Chromosome 5 - NC_000005.9Genomic Context describing neighboring genes Neighboring gene oligonucleotide/oligosaccharide-binding fold containing 1 pseudogene Neighboring gene peptidylprolyl isomerase G (cyclophilin G) pseudogene 1 Neighboring gene protein phosphatase 1, regulatory (inhibitor) subunit 2 pseudogene 3 Neighboring gene apolipoprotein O pseudogene 1 Neighboring gene T-cell immunoglobulin and mucin domain containing 4

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Limb-girdle muscular dystrophy

    Summary from GeneReviews: Limb-Girdle Muscular Dystrophy Overview Go to GeneReviews

    Disease Characteristics
    Limb-girdle muscular dystrophy (LGMD) is a purely descriptive term, generally reserved for childhood- or adult-onset muscular dystrophies that are distinct from the much more common X-linked dystrophinopathies. LGMDs are typically nonsyndromic, with clinical involvement typically limited to skeletal muscle. Individuals with LGMD generally show weakness and wasting restricted to the limb musculature, proximal greater than distal, and muscle degeneration/regeneration on muscle biopsy. Most individuals with LGMD show relative sparing of the bulbar muscles, although exceptions occur, depending on the genetic subtype. Onset, progression, and distribution of the weakness and wasting vary considerably among individuals and genetic subtypes.
    Diagnosis Testing
    The limb-girdle muscular dystrophies typically show degeneration/regeneration (dystrophic changes) on muscle biopsy, which is usually associated with elevated serum creatine kinase concentration. For any male or female suspected of having limb-girdle muscular dystrophy, it is necessary to first rule out an X-linked dystrophinopathy. Biochemical testing (i.e., protein testing by immunostaining or immunblotting) performed on a muscle biopsy can establish the diagnosis of the following LGMD types: sarcoglycanopathy, calpainopathy, dysferlinopathy, and O-linked glycosylation defects (also known as dystroglycanopathy). In some cases, demonstration of complete or partial deficiencies for any particular protein can then be followed by mutation studies of the corresponding gene. Mutations in a number of genes have been associated with types of LGMD.
    Genetic Counseling
    The term LGMD1 (including, e.g., LGMD1A, LGMD1B) refers to genetic types showing dominant inheritance, whereas LGMD2 refers to types with autosomal recessive inheritance. Mutations at more than 50 loci have been reported, making accurate diagnosis and genetic counseling a challenge. In most instances, the proband represents a simplex case, and the families can be counseled for recurrence risks associated with rare autosomal recessive conditions, which leaves a "significant" risk only for the sibs of the proband. If the causative mutation(s) have been identified in the family, prenatal testing for pregnancies at increased risk is possible through laboratories offering either testing for the gene of interest or custom testing.
    References

    Limb-girdle muscular dystrophy, type 2F

    Summary from GeneReviews: Limb-Girdle Muscular Dystrophy Overview Go to GeneReviews

    Disease Characteristics
    Limb-girdle muscular dystrophy (LGMD) is a purely descriptive term, generally reserved for childhood- or adult-onset muscular dystrophies that are distinct from the much more common X-linked dystrophinopathies. LGMDs are typically nonsyndromic, with clinical involvement typically limited to skeletal muscle. Individuals with LGMD generally show weakness and wasting restricted to the limb musculature, proximal greater than distal, and muscle degeneration/regeneration on muscle biopsy. Most individuals with LGMD show relative sparing of the bulbar muscles, although exceptions occur, depending on the genetic subtype. Onset, progression, and distribution of the weakness and wasting vary considerably among individuals and genetic subtypes.
    Diagnosis Testing
    The limb-girdle muscular dystrophies typically show degeneration/regeneration (dystrophic changes) on muscle biopsy, which is usually associated with elevated serum creatine kinase concentration. For any male or female suspected of having limb-girdle muscular dystrophy, it is necessary to first rule out an X-linked dystrophinopathy. Biochemical testing (i.e., protein testing by immunostaining or immunblotting) performed on a muscle biopsy can establish the diagnosis of the following LGMD types: sarcoglycanopathy, calpainopathy, dysferlinopathy, and O-linked glycosylation defects (also known as dystroglycanopathy). In some cases, demonstration of complete or partial deficiencies for any particular protein can then be followed by mutation studies of the corresponding gene. Mutations in a number of genes have been associated with types of LGMD.
    Genetic Counseling
    The term LGMD1 (including, e.g., LGMD1A, LGMD1B) refers to genetic types showing dominant inheritance, whereas LGMD2 refers to types with autosomal recessive inheritance. Mutations at more than 50 loci have been reported, making accurate diagnosis and genetic counseling a challenge. In most instances, the proband represents a simplex case, and the families can be counseled for recurrence risks associated with rare autosomal recessive conditions, which leaves a "significant" risk only for the sibs of the proband. If the causative mutation(s) have been identified in the family, prenatal testing for pregnancies at increased risk is possible through laboratories offering either testing for the gene of interest or custom testing.
    References

    Primary dilated cardiomyopathy

    Summary from GeneReviews: Dilated Cardiomyopathy Overview Go to GeneReviews

    Disease Characteristics
    Nonsyndromic isolated dilated cardiomyopathy (DCM) is characterized by left ventricular enlargement and systolic dysfunction, a reduction in the myocardial force of contraction. DCM usually presents with any one of the following: Heart failure with symptoms of congestion (edema, orthopnea, paroxysmal dyspnea) and/or reduced cardiac output (fatigue, dyspnea on exertion). Arrhythmias and/or conduction system disease. Thromboembolic disease (from left ventricular mural thrombus) including stroke .
    Diagnosis Testing
    Genetic forms of DCM must be distinguished from other identifiable causes. After exclusion of all identifiable non-genetic causes, DCM is traditionally referred to as idiopathic dilated cardiomyopathy. When two or more closely related family members meet a formal diagnostic standard for idiopathic dilated cardiomyopathy, the diagnosis of familial dilated cardiomyopathy (FDC) is made. The genetic forms of DCM are diagnosed by family history and molecular genetic testing.
    Genetic Counseling
    Genetic DCM can be inherited in an autosomal dominant, autosomal recessive, or X-linked manner. Maternal mitochondrial inheritance has also been reported; however, mitochondrial forms of DCM, although highly variable in presentation (including mild adult-onset forms), are usually syndromic and thus outside the scope of this review. Genetic counseling and risk assessment depend on determination of the specific DCM subtype in an individual.
    References
    Products Interactant Other Gene Complex Source Pubs Description
    Q92629 Q14315 FLNC    HPRD  PubMed  
    Q92629 Q16586 SGCA    HPRD  PubMed  
    Q92629 Q16585 SGCB    HPRD  PubMed  
    Q92629 Q13326 SGCG    HPRD  PubMed  
    BioGRID:112342 BioGRID:106614 ADA    BioGRID  PubMed Two-hybrid 
    BioGRID:112342 BioGRID:108607 FLNC    BioGRID  PubMed Affinity Capture-Western; Reconstituted Complex; Two-hybrid 
    • Arrhythmogenic right ventricular cardiomyopathy, organism-specific biosystem (from WikiPathways)
      Arrhythmogenic right ventricular cardiomyopathy, organism-specific biosystemAdapted from KEGG: http://www.genome.jp/kegg/pathway/hsa/hsa05412.html
    • Arrhythmogenic right ventricular cardiomyopathy (ARVC), organism-specific biosystem (from KEGG)
      Arrhythmogenic right ventricular cardiomyopathy (ARVC), organism-specific biosystemArrhythmogenic right ventricular cardiomyopathy (ARVC) is an inherited heart muscle disease that may result in arrhythmia, heart failure, and sudden death. The hallmark pathological findings are prog...
    • Arrhythmogenic right ventricular cardiomyopathy (ARVC), conserved biosystem (from KEGG)
      Arrhythmogenic right ventricular cardiomyopathy (ARVC), conserved biosystemArrhythmogenic right ventricular cardiomyopathy (ARVC) is an inherited heart muscle disease that may result in arrhythmia, heart failure, and sudden death. The hallmark pathological findings are prog...
    • Dilated cardiomyopathy, organism-specific biosystem (from KEGG)
      Dilated cardiomyopathy, organism-specific biosystemDilated cardiomyopathy (DCM) is a heart muscle disease characterised by dilation and impaired contraction of the left or both ventricles that results in progressive heart failure and sudden cardiac d...
    • Dilated cardiomyopathy, conserved biosystem (from KEGG)
      Dilated cardiomyopathy, conserved biosystemDilated cardiomyopathy (DCM) is a heart muscle disease characterised by dilation and impaired contraction of the left or both ventricles that results in progressive heart failure and sudden cardiac d...
    • Hypertrophic cardiomyopathy (HCM), organism-specific biosystem (from KEGG)
      Hypertrophic cardiomyopathy (HCM), organism-specific biosystemHypertrophic cardiomyopathy (HCM) is a primary myocardial disorder with an autosomal dominant pattern of inheritance that is characterized by hypertrophy of the left ventricles with histological feat...
    • Hypertrophic cardiomyopathy (HCM), conserved biosystem (from KEGG)
      Hypertrophic cardiomyopathy (HCM), conserved biosystemHypertrophic cardiomyopathy (HCM) is a primary myocardial disorder with an autosomal dominant pattern of inheritance that is characterized by hypertrophy of the left ventricles with histological feat...
    • Viral myocarditis, organism-specific biosystem (from KEGG)
      Viral myocarditis, organism-specific biosystemMyocarditis is a cardiac disease associated with inflammation and injury of the myocardium. It results from various etiologies, both noninfectious and infectious, but coxsackievirus B3 (CVB3) is stil...

    Markers

    Homology

    Clone Names

    • MGC22567

    Gene Ontology Provided by GOA

    Process Evidence Code Pubs
    cytoskeleton organization IEA
    Inferred from Electronic Annotation
    more info
     
    muscle organ development TAS
    Traceable Author Statement
    more info
    PubMed 
    Component Evidence Code Pubs
    cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    cytoskeleton IEA
    Inferred from Electronic Annotation
    more info
     
    dystrophin-associated glycoprotein complex IDA
    Inferred from Direct Assay
    more info
    PubMed 
    integral to membrane IEA
    Inferred from Electronic Annotation
    more info
     
    plasma membrane TAS
    Traceable Author Statement
    more info
    PubMed 
    sarcoglycan complex IEA
    Inferred from Electronic Annotation
    more info
     
    sarcolemma IEA
    Inferred from Electronic Annotation
    more info
     
    Preferred Names
    delta-sarcoglycan
    Names
    delta-sarcoglycan
    delta-SG
    placental delta sarcoglycan
    35 kDa dystrophin-associated glycoprotein
    dystrophin associated glycoprotein, delta sarcoglycan

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_008693.2 RefSeqGene

      Range
      461414..902446
      Download
      GenBank, FASTA, Sequence Viewer (Graphics), LRG_205

    mRNA and Protein(s)

    1. NM_000337.5NP_000328.2  delta-sarcoglycan isoform 1

      Status: REVIEWED

      Description
      Transcript Variant: This variant (1, also known as SGCD1), encodes the longest isoform (1).
      Source sequence(s)
      AC025434, BC020740, BQ434817, BQ446019, BX537948
      Consensus CDS
      CCDS47325.1
      UniProtKB/Swiss-Prot
      Q92629
      Conserved Domains (1) summary
      pfam04790
      Location:22283
      Blast Score: 922
      Sarcoglycan_1; Sarcoglycan complex subunit protein
    2. NM_001128209.1NP_001121681.1  delta-sarcoglycan isoform 3

      Status: REVIEWED

      Description
      Transcript Variant: This variant (3) is lacking an internal exon from the 5' end compared to transcript variant 1, resulting in translation initiation from the second in-frame AUG, and an isoform (3) missing 1 aa at the N-terminus compared to isoform 1.
      Source sequence(s)
      AC025434, BC020740, BQ434817, BQ446019, BX537948, DA561069
      Consensus CDS
      CCDS47327.1
      UniProtKB/Swiss-Prot
      Q92629
      Related
      ENSP00000403003, OTTHUMP00000223946, ENST00000435422, OTTHUMT00000373469
      Conserved Domains (1) summary
      pfam04790
      Location:21282
      Blast Score: 922
      Sarcoglycan_1; Sarcoglycan complex subunit protein
    3. NM_172244.2NP_758447.1  delta-sarcoglycan isoform 2

      Status: REVIEWED

      Description
      Transcript Variant: This variant (2, also known as SGCD2), contains an alternate 3' terminal exon compared to transcript variant 1. This results in a shorter isoform (2) with a distinct C-terminus compared to isoform 1.
      Source sequence(s)
      AI139498, BQ434817, U58331
      Consensus CDS
      CCDS47326.1
      UniProtKB/Swiss-Prot
      Q92629
      Related
      ENSP00000408324, ENST00000447401
      Conserved Domains (1) summary
      pfam04790
      Location:22235
      Blast Score: 733
      Sarcoglycan_1; Sarcoglycan complex subunit protein

    RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 104

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh37.p10 Primary Assembly

    Genomic

    1. NC_000005.9 Reference GRCh37.p10 Primary Assembly

      Range
      155753767..156194799
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate HuRef

    Genomic

    1. AC_000137.1 Alternate HuRef

      Range
      150847340..151288441
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate CHM1_1.0

    Genomic

    1. NC_018916.1 Alternate CHM1_1.0

      Range
      155978191..156418962
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

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