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    SGCB sarcoglycan, beta (43kDa dystrophin-associated glycoprotein) [ Homo sapiens (human) ]

    Gene ID: 6443, updated on 11-May-2013
    Official Symbol
    SGCBprovided by HGNC
    Official Full Name
    sarcoglycan, beta (43kDa dystrophin-associated glycoprotein)provided by HGNC
    Primary source
    HGNC:10806
    See related
    Ensembl:ENSG00000163069; HPRD:02942; MIM:600900; Vega:OTTHUMG00000128697
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    A3b; SGC; LGMD2E
    Summary
    This gene encodes a member of the sarcoglycan family. Sarcoglycans are transmembrane components in the dystrophin-glycoprotein complex which help stabilize the muscle fiber membranes and link the muscle cytoskeleton to the extracellular matrix. Mutations in this gene have been associated with limb-girdle muscular dystrophy.[provided by RefSeq, Oct 2008]
    Location :
    4q12
    Sequence :
    Chromosome: 4; NC_000004.11 (52886861..52904485, complement)
    See SGCB in Epigenomics, MapViewer

    Chromosome 4 - NC_000004.11Genomic Context describing neighboring genes Neighboring gene ribosomal protein L37a pseudogene 2 Neighboring gene leucine rich repeat containing 66 Neighboring gene spermatogenesis associated 18 Neighboring gene metallophosphoesterase 1 pseudogene

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Limb-girdle muscular dystrophy

    Summary from GeneReviews: Limb-Girdle Muscular Dystrophy Overview Go to GeneReviews

    Disease Characteristics
    Limb-girdle muscular dystrophy (LGMD) is a purely descriptive term, generally reserved for childhood- or adult-onset muscular dystrophies that are distinct from the much more common X-linked dystrophinopathies. LGMDs are typically nonsyndromic, with clinical involvement typically limited to skeletal muscle. Individuals with LGMD generally show weakness and wasting restricted to the limb musculature, proximal greater than distal, and muscle degeneration/regeneration on muscle biopsy. Most individuals with LGMD show relative sparing of the bulbar muscles, although exceptions occur, depending on the genetic subtype. Onset, progression, and distribution of the weakness and wasting vary considerably among individuals and genetic subtypes.
    Diagnosis Testing
    The limb-girdle muscular dystrophies typically show degeneration/regeneration (dystrophic changes) on muscle biopsy, which is usually associated with elevated serum creatine kinase concentration. For any male or female suspected of having limb-girdle muscular dystrophy, it is necessary to first rule out an X-linked dystrophinopathy. Biochemical testing (i.e., protein testing by immunostaining or immunblotting) performed on a muscle biopsy can establish the diagnosis of the following LGMD types: sarcoglycanopathy, calpainopathy, dysferlinopathy, and O-linked glycosylation defects (also known as dystroglycanopathy). In some cases, demonstration of complete or partial deficiencies for any particular protein can then be followed by mutation studies of the corresponding gene. Molecular genetic testing for most genes in which mutations have been identified to cause LGMD is available on a clinical basis.
    Genetic Counseling
    The term LGMD1 (including, e.g., LGMD1A, LGMD1B) refers to genetic types showing dominant inheritance, whereas LGMD2 refers to types with autosomal recessive inheritance. Mutations at more than 50 loci have been reported, making accurate diagnosis and genetic counseling a challenge. In most instances, the proband represents a simplex case, and the families can be counseled for recurrence risks associated with rare autosomal recessive conditions, which leaves a "significant" risk only for the sibs of the proband. Prenatal diagnosis for many forms of limb-girdle muscular dystrophy is available for families in which the causative mutations have already been identified.
    References
    Protein Gene Interaction Pubs
    Tat, p14 tat HIV-1 Tat downregulates sarcoglycan, beta in HEK 293T cells PubMed

    Go to the HIV-1, Human Protein Interaction Database

    Products Interactant Other Gene Complex Source Pubs Description
    Q16585 Q16586 SGCA    HPRD  PubMed  
    Q16585 Q92629 SGCD    HPRD  PubMed  
    Q16585 Q13326 SGCG    HPRD  PubMed  
    Q16585 Q96LD1 SGCZ    HPRD  PubMed  
    BioGRID:112341 BioGRID:113164 UBC    BioGRID  PubMed Affinity Capture-MS 
    • Arrhythmogenic right ventricular cardiomyopathy, organism-specific biosystem (from WikiPathways)
      Arrhythmogenic right ventricular cardiomyopathy, organism-specific biosystemAdapted from KEGG: http://www.genome.jp/kegg/pathway/hsa/hsa05412.html
    • Arrhythmogenic right ventricular cardiomyopathy (ARVC), organism-specific biosystem (from KEGG)
      Arrhythmogenic right ventricular cardiomyopathy (ARVC), organism-specific biosystemArrhythmogenic right ventricular cardiomyopathy (ARVC) is an inherited heart muscle disease that may result in arrhythmia, heart failure, and sudden death. The hallmark pathological findings are prog...
    • Arrhythmogenic right ventricular cardiomyopathy (ARVC), conserved biosystem (from KEGG)
      Arrhythmogenic right ventricular cardiomyopathy (ARVC), conserved biosystemArrhythmogenic right ventricular cardiomyopathy (ARVC) is an inherited heart muscle disease that may result in arrhythmia, heart failure, and sudden death. The hallmark pathological findings are prog...
    • Dilated cardiomyopathy, organism-specific biosystem (from KEGG)
      Dilated cardiomyopathy, organism-specific biosystemDilated cardiomyopathy (DCM) is a heart muscle disease characterised by dilation and impaired contraction of the left or both ventricles that results in progressive heart failure and sudden cardiac d...
    • Dilated cardiomyopathy, conserved biosystem (from KEGG)
      Dilated cardiomyopathy, conserved biosystemDilated cardiomyopathy (DCM) is a heart muscle disease characterised by dilation and impaired contraction of the left or both ventricles that results in progressive heart failure and sudden cardiac d...
    • Hypertrophic cardiomyopathy (HCM), organism-specific biosystem (from KEGG)
      Hypertrophic cardiomyopathy (HCM), organism-specific biosystemHypertrophic cardiomyopathy (HCM) is a primary myocardial disorder with an autosomal dominant pattern of inheritance that is characterized by hypertrophy of the left ventricles with histological feat...
    • Hypertrophic cardiomyopathy (HCM), conserved biosystem (from KEGG)
      Hypertrophic cardiomyopathy (HCM), conserved biosystemHypertrophic cardiomyopathy (HCM) is a primary myocardial disorder with an autosomal dominant pattern of inheritance that is characterized by hypertrophy of the left ventricles with histological feat...
    • Viral myocarditis, organism-specific biosystem (from KEGG)
      Viral myocarditis, organism-specific biosystemMyocarditis is a cardiac disease associated with inflammation and injury of the myocardium. It results from various etiologies, both noninfectious and infectious, but coxsackievirus B3 (CVB3) is stil...

    Markers

    Homology

    Gene Ontology Provided by GOA

    Process Evidence Code Pubs
    cardiocyte differentiation IEA
    Inferred from Electronic Annotation
    more info
     
    cytoskeleton organization IEA
    Inferred from Electronic Annotation
    more info
     
    muscle organ development TAS
    Traceable Author Statement
    more info
    PubMed 
    Component Evidence Code Pubs
    cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    cytoskeleton IEA
    Inferred from Electronic Annotation
    more info
     
    dystrophin-associated glycoprotein complex IDA
    Inferred from Direct Assay
    more info
    PubMed 
    integral to plasma membrane TAS
    Traceable Author Statement
    more info
    PubMed 
    sarcoglycan complex IEA
    Inferred from Electronic Annotation
    more info
     
    sarcolemma IEA
    Inferred from Electronic Annotation
    more info
     
    Preferred Names
    beta-sarcoglycan
    Names
    beta-sarcoglycan
    43DAG
    beta-SG
    43 kDa dystrophin-associated glycoprotein
    limb girdle muscular dystrophy 2E (non-linked families)
    beta-sarcoglycan(43kD dystrophin-associated glycoprotein)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_008891.1 RefSeqGene

      Range
      5001..22625
      Download
      GenBank, FASTA, Sequence Viewer (Graphics), LRG_204

    mRNA and Protein(s)

    1. NM_000232.4NP_000223.1  beta-sarcoglycan

      Status: REVIEWED

      Source sequence(s)
      AC093858, AK094731, BC020709, CA449352, CN483961
      Consensus CDS
      CCDS3488.1
      UniProtKB/Swiss-Prot
      Q16585
      UniProtKB/TrEMBL
      Q5U0N0
      Related
      ENSP00000370839, OTTHUMP00000158880, ENST00000381431, OTTHUMT00000250596
      Conserved Domains (1) summary
      pfam04790
      Location:52304
      Blast Score: 655
      Sarcoglycan_1; Sarcoglycan complex subunit protein

    RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 104

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh37.p10 Primary Assembly

    Genomic

    1. NC_000004.11 Reference GRCh37.p10 Primary Assembly

      Range
      52886861..52904485, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate HuRef

    Genomic

    1. AC_000136.1 Alternate HuRef

      Range
      48828371..48845953, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate CHM1_1.0

    Genomic

    1. NC_018915.1 Alternate CHM1_1.0

      Range
      52787326..52804947, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

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