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Rpl4 ribosomal protein L4 [ Rattus norvegicus (Norway rat) ]

Gene ID: 64302, updated on 8-May-2016
Official Symbol
Rpl4provided by RGD
Official Full Name
ribosomal protein L4provided by RGD
Primary source
RGD:619824
See related
Ensembl:ENSRNOG00000009378
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Rattus
Summary
60S ribosomal subunit protein [RGD, Feb 2006]
Orthologs
Location:
8q24
Exon count:
10
Annotation release Status Assembly Chr Location
105 current Rnor_6.0 (GCF_000001895.5) 8 NC_005107.4 (69121682..69126805)
104 previous assembly Rnor_5.0 (GCF_000001895.4) 8 NC_005107.3 (68827918..68833041)

Chromosome 8 - NC_005107.4Genomic Context describing neighboring genes Neighboring gene SMAD family member 6 Neighboring gene zwilch kinetochore protein Neighboring gene lactase-like Neighboring gene small nuclear RNA activating complex, polypeptide 5 Neighboring gene mitogen activated protein kinase kinase 1 Neighboring gene iduronate 2-sulfatase

Products Interactant Other Gene Complex Source Pubs Description

Markers

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
5S rRNA binding IDA
Inferred from Direct Assay
more info
PubMed 
poly(A) RNA binding IEA
Inferred from Electronic Annotation
more info
 
poly(A) RNA binding ISO
Inferred from Sequence Orthology
more info
 
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
structural constituent of ribosome IBA
Inferred from Biological aspect of Ancestor
more info
 
structural constituent of ribosome IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
brain development IEP
Inferred from Expression Pattern
more info
PubMed 
brainstem development IEP
Inferred from Expression Pattern
more info
PubMed 
cell differentiation IEP
Inferred from Expression Pattern
more info
PubMed 
cellular response to organonitrogen compound IEP
Inferred from Expression Pattern
more info
PubMed 
positive regulation of axon extension IMP
Inferred from Mutant Phenotype
more info
PubMed 
positive regulation of axonogenesis IMP
Inferred from Mutant Phenotype
more info
PubMed 
translation IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
A band IDA
Inferred from Direct Assay
more info
PubMed 
cytoplasm ISO
Inferred from Sequence Orthology
more info
 
cytosolic large ribosomal subunit IDA
Inferred from Direct Assay
more info
PubMed 
cytosolic large ribosomal subunit IEA
Inferred from Electronic Annotation
more info
 
cytosolic large ribosomal subunit ISO
Inferred from Sequence Orthology
more info
 
extracellular exosome IEA
Inferred from Electronic Annotation
more info
 
extracellular exosome ISO
Inferred from Sequence Orthology
more info
 
focal adhesion IEA
Inferred from Electronic Annotation
more info
 
focal adhesion ISO
Inferred from Sequence Orthology
more info
 
intracellular ribonucleoprotein complex ISO
Inferred from Sequence Orthology
more info
 
large ribosomal subunit IDA
Inferred from Direct Assay
more info
PubMed 
membrane IEA
Inferred from Electronic Annotation
more info
 
membrane ISO
Inferred from Sequence Orthology
more info
 
nucleolus IEA
Inferred from Electronic Annotation
more info
 
nucleolus ISO
Inferred from Sequence Orthology
more info
 
nucleus ISO
Inferred from Sequence Orthology
more info
 
Preferred Names
60S ribosomal protein L4
Names
60S ribosomal protein L1
L1

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_022510.1NP_071955.1  60S ribosomal protein L4

    See identical proteins and their annotated locations for NP_071955.1

    Status: PROVISIONAL

    Source sequence(s)
    X82180
    UniProtKB/Swiss-Prot
    P50878
    Related
    ENSRNOP00000013462, ENSRNOT00000013461
    Conserved Domains (3) summary
    PTZ00428
    Location:2350
    PTZ00428; 60S ribosomal protein L4; Provisional
    pfam14374
    Location:275350
    Ribos_L4_asso_C; 60S ribosomal protein L4 C-terminal domain
    cl00325
    Location:10265
    Ribosomal_L4; Ribosomal protein L4/L1 family

RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 105 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Rnor_6.0 Primary Assembly

Genomic

  1. NC_005107.4 Reference Rnor_6.0 Primary Assembly

    Range
    69121682..69126805
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate Rn_Celera

Genomic

  1. AC_000076.1 Alternate Rn_Celera

    Range
    64077918..64083041
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)