These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in this
section to the one reported in Genomic regions, transcripts, and products above.
Genomic
-
NG_021258.1 RefSeqGene
- Range
- 5001..9785
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
NM_001032396.2 → NP_001027568.1 E3 ubiquitin-protein ligase Praja-1 isoform b
Status: REVIEWED
- Description
- Transcript Variant: This variant (2, also known as PJA1beta) lacks a portion of the 5' UTR and 5' coding region, and uses a downstream start codon, compared to variant 1. The encoded isoform (b) is shorter at the N-terminus, compared to isoform a.
- Source sequence(s)
-
AK226171, BM127146, DC349747
- Consensus CDS
-
CCDS35316.1
- UniProtKB/TrEMBL
-
A2A322
- Related
- ENSP00000363699, OTTHUMP00000158771, ENST00000374571, OTTHUMT00000250472
- Conserved Domains (2) summary
-
- cd00162
Location:539 – 581
Blast Score: 131
- RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...
- pfam13923
Location:536 – 581
Blast Score: 135
- zf-C3HC4_2; Zinc finger, C3HC4 type (RING finger)
-
NM_022368.4 → NP_071763.2 E3 ubiquitin-protein ligase Praja-1 isoform c
Status: REVIEWED
- Description
- Transcript Variant: This variant (3) lacks an in-frame segment of the 5' coding region, compared to variant 1, resulting in an isoform (c) that is shorter than isoform a.
- Source sequence(s)
-
AF264620, AL157699, BM127146, DC349747
- Consensus CDS
-
CCDS14392.1
- UniProtKB/Swiss-Prot
-
Q8NG27
- Related
- ENSP00000363712, OTTHUMP00000023458, ENST00000374584, OTTHUMT00000057032
- Conserved Domains (2) summary
-
- cd00162
Location:406 – 448
Blast Score: 130
- RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...
- pfam13923
Location:403 – 448
Blast Score: 135
- zf-C3HC4_2; Zinc finger, C3HC4 type (RING finger)
-
NM_145119.3 → NP_660095.1 E3 ubiquitin-protein ligase Praja-1 isoform a
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) represents the longest transcript and encodes the longest isoform (a).
- Source sequence(s)
-
BC075803, BM127146, DC349747
- Consensus CDS
-
CCDS14393.1
- UniProtKB/Swiss-Prot
-
Q8NG27
- Related
- ENSP00000355014, OTTHUMP00000023457, ENST00000361478, OTTHUMT00000057031
- Conserved Domains (2) summary
-
- cd00162
Location:594 – 636
Blast Score: 133
- RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...
- pfam13923
Location:591 – 636
Blast Score: 137
- zf-C3HC4_2; Zinc finger, C3HC4 type (RING finger)
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as RefSeqs
for chromosomes and scaffolds (contigs) from both reference and alternate assemblies.
Model RNAs and proteins are also reported here.
Reference GRCh37.p5 Primary Assembly
Genomic
-
NC_000023.10 Reference GRCh37.p5 Primary Assembly
- Range
- 68380581..68385365, complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
Alternate HuRef
Genomic
-
AC_000155.1 Alternate HuRef
- Range
- 62204531..62209313, complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)