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Trpv6 transient receptor potential cation channel, subfamily V, member 6 [ Mus musculus (house mouse) ]

Gene ID: 64177, updated on 28-May-2016
Official Symbol
Trpv6provided by MGI
Official Full Name
transient receptor potential cation channel, subfamily V, member 6provided by MGI
Primary source
MGI:MGI:1927259
See related
Ensembl:ENSMUSG00000029868 Vega:OTTMUSG00000051429
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
CAT; Cac; CaT1; Ecac2; Otrpc3
Orthologs
Location:
6; 6 B2
Exon count:
16
Annotation release Status Assembly Chr Location
105 current GRCm38.p3 (GCF_000001635.23) 6 NC_000072.6 (41620619..41636480, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 6 NC_000072.5 (41570618..41586404, complement)

Chromosome 6 - NC_000072.6Genomic Context describing neighboring genes Neighboring gene predicted gene, 38582 Neighboring gene Eph receptor B6 Neighboring gene predicted gene, 38795 Neighboring gene predicted gene, 34642 Neighboring gene transient receptor potential cation channel, subfamily V, member 5 Neighboring gene RIKEN cDNA 1700034O15 gene

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
calcium channel activity IDA
Inferred from Direct Assay
more info
PubMed 
calcium channel activity ISO
Inferred from Sequence Orthology
more info
 
calmodulin binding ISO
Inferred from Sequence Orthology
more info
 
ion channel activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
calcium ion homeostasis IMP
Inferred from Mutant Phenotype
more info
PubMed 
calcium ion import ISO
Inferred from Sequence Orthology
more info
 
calcium ion transmembrane transport IEA
Inferred from Electronic Annotation
more info
 
calcium ion transport IDA
Inferred from Direct Assay
more info
PubMed 
calcium ion transport ISO
Inferred from Sequence Orthology
more info
 
ion transport IEA
Inferred from Electronic Annotation
more info
 
parathyroid hormone secretion IMP
Inferred from Mutant Phenotype
more info
PubMed 
transmembrane transport IEA
Inferred from Electronic Annotation
more info
 
transport IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
extracellular exosome ISO
Inferred from Sequence Orthology
more info
 
integral component of membrane ISS
Inferred from Sequence or Structural Similarity
more info
PubMed 
membrane IEA
Inferred from Electronic Annotation
more info
 
plasma membrane ISO
Inferred from Sequence Orthology
more info
 
Preferred Names
transient receptor potential cation channel subfamily V member 6
Names
calcium transport protein 1
epithelial calcium channel 2
osmosensitive transient receptor potential channel 3

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_022413.4NP_071858.3  transient receptor potential cation channel subfamily V member 6

    See identical proteins and their annotated locations for NP_071858.3

    Status: VALIDATED

    Source sequence(s)
    AK077234, AK168760, CF583712
    Consensus CDS
    CCDS20052.1
    UniProtKB/Swiss-Prot
    Q91WD2
    Related
    ENSMUSP00000143854, ENSMUST00000201471
    Conserved Domains (2) summary
    cd00204
    Location:119242
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    TIGR00870
    Location:52748
    trp; transient-receptor-potential calcium channel protein

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 105 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p3 C57BL/6J

Genomic

  1. NC_000072.6 Reference GRCm38.p3 C57BL/6J

    Range
    41620619..41636480 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006506452.2XP_006506515.1  

    Conserved Domains (2) summary
    cd00204
    Location:100223
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    TIGR00870
    Location:12729
    trp; transient-receptor-potential calcium channel protein

RNA

  1. XR_868871.1 RNA Sequence

Alternate Mm_Celera

Genomic

  1. AC_000028.1 Alternate Mm_Celera

    Range
    41573210..41588993 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)