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Tcstv2c two cell stage variable group member 2C [ Mus musculus (house mouse) ]

Gene ID: 639910, updated on 8-Feb-2024

Summary

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Official Symbol
Tcstv2cprovided by MGI
Official Full Name
two cell stage variable group member 2Cprovided by MGI
Primary source
MGI:MGI:5434123
See related
Ensembl:ENSMUSG00000096323 AllianceGenome:MGI:5434123
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm20767
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
13 D2.3; 13
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 13 NC_000079.7 (120601782..120616871)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 13 NC_000079.6 (120140246..120155335)

Chromosome 13 - NC_000079.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 21378 Neighboring gene Uncharacterized LOC132475968 Neighboring gene predicted gene, 20769 Neighboring gene predicted gene, 52031 Neighboring gene predicted gene, 39477

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Zfp206 regulates ES cell gene expression and differentiation. Zhang W, et al. Nucleic Acids Res, 2006. PMID 16971461, Free PMC Article
  2. Fancd2 in vivo interaction network reveals a non-canonical role in mitochondrial function. Zhang T, et al. Sci Rep, 2017 Apr 5. PMID 28378742, Free PMC Article
  3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

General protein information

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Preferred Names
2-cell-stage, variable group, member 1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001039648.3 → NP_001034737.2  2-cell-stage, variable group, member 1-like

    See identical proteins and their annotated locations for NP_001034737.2

    Status: VALIDATED

    Source sequence(s)
    AK139926, BC147578
    Consensus CDS
    CCDS56908.1
    UniProtKB/TrEMBL
    O70517, Q3USZ4
    Related
    ENSMUSP00000152988.2, ENSMUST00000225683.2
    Conserved Domains (1) summary
    pfam07270
    Location:7 → 155
    DUF1438; Protein of unknown function (DUF1438)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000079.7 Reference GRCm39 C57BL/6J

    Range
    120601782..120616871
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006517734.2 → XP_006517797.1  2-cell-stage, variable group, member 1-like isoform X1

    See identical proteins and their annotated locations for XP_006517797.1

    UniProtKB/TrEMBL
    O70517, Q3USZ4
    Related
    ENSMUSP00000137504.2, ENSMUST00000179071.2
    Conserved Domains (1) summary
    pfam07270
    Location:7 → 155
    DUF1438; Protein of unknown function (DUF1438)
Nucleotide Protein Strain
Heading Accession and Version

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