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    SDHB succinate dehydrogenase complex, subunit B, iron sulfur (Ip) [ Homo sapiens (human) ]

    Gene ID: 6390, updated on 18-May-2013
    Official Symbol
    SDHBprovided by HGNC
    Official Full Name
    succinate dehydrogenase complex, subunit B, iron sulfur (Ip)provided by HGNC
    Primary source
    HGNC:10681
    See related
    Ensembl:ENSG00000117118; HPRD:01707; MIM:185470; Vega:OTTHUMG00000002289
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    IP; SDH; CWS2; PGL4; SDH1; SDH2; SDHIP
    Summary
    Complex II of the respiratory chain, which is specifically involved in the oxidation of succinate, carries electrons from FADH to CoQ. The complex is composed of four nuclear-encoded subunits and is localized in the mitochondrial inner membrane. The iron-sulfur subunit is highly conserved and contains three cysteine-rich clusters which may comprise the iron-sulfur centers of the enzyme. Sporadic and familial mutations in this gene result in paragangliomas and pheochromocytoma, and support a link between mitochondrial dysfunction and tumorigenesis. [provided by RefSeq, Jul 2008]
    Location :
    1p36.1-p35
    Sequence :
    Chromosome: 1; NC_000001.10 (17345217..17380665, complement)
    See SDHB in Epigenomics, MapViewer

    Chromosome 1 - NC_000001.10Genomic Context describing neighboring genes Neighboring gene microfibrillar-associated protein 2 Neighboring gene ATPase type 13A2 Neighboring gene peptidyl arginine deiminase, type II Neighboring gene uncharacterized LOC400743

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Paragangliomas 4

    Summary from GeneReviews: Hereditary Paraganglioma-Pheochromocytoma Syndromes Go to GeneReviews

    Disease Characteristics
    Hereditary paraganglioma-pheochromocytoma (PGL/PCC) syndromes are characterized by paragangliomas (tumors that arise from neuroendocrine tissues symmetrically distributed along the paravertebral axis from the base of the skull to the pelvis) and by pheochromocytomas (paragangliomas that are confined to the adrenal medulla). Sympathetic paragangliomas hypersecrete catecholamines; parasympathetic paragangliomas are most often nonsecretory. Extra-adrenal parasympathetic paragangliomas are located predominantly in the skull base, neck, and upper medistinum; approximately 95% of such tumors are nonsecretory. In contrast, sympathetic extra-adrenal paragangliomas are generally confined to the lower mediastinum, abdomen, and pelvis, and are typically secretory. Pheochromocytomas, which arise from the adrenal medulla, typically hypersecrete catecholamines. Symptoms of PGL/PCC result either from mass effects or catecholamine hypersecretion (e.g., sustained or paroxysmal elevations in blood pressure, headache, episodic profuse sweating, forceful palpitations, pallor, and apprehension or anxiety). The risk for malignant transformation is greater for extra-adrenal sympathetic paragangliomas than for pheochromocytomas or skull base and neck paragangliomas.
    Diagnosis Testing
    The diagnosis of hereditary PGL/PCC syndromes is based on physical examination, family history, imaging studies, biochemical testing, and molecular genetic testing. SDHA, SDHB, SDHC and SDHD are four nuclear genes that encode the four subunits of the mitochondrial enzyme succinate dehydrogenase (SDH). A fifth nuclear gene, SDHAF2 (also known as SDH5) encodes a protein that appears to be required for flavination of another SDH subunit, SDHA. These are collectively known as the SDHx genes. Mutations in MAX predispose to PCC; a subset of individuals with mutations in MAX will also develop PGL. KIF1B and EGLN1 (formerly known as PHD2) have been reported to be associated with hereditary PGL/PCC, but their clinical significance is still unclear. Molecular genetic testing for disease-causing variants in SDHA, SDHB, SDHC, SDHD, SDHAF2, and MAX is clinically available.
    Genetic Counseling
    The hereditary PGL/PCC syndromes are inherited in an autosomal dominant manner. Mutations in SDHD (PGL1) demonstrate parent-of-origin effects and generally cause disease only when the mutation is inherited from the father. Initial data suggest that mutations in SDHAF2 (PGL2) and MAX exhibit parent-of-origin effects similar to those of mutations in SDHD. A proband with a hereditary PGL/PCC syndrome may have inherited the mutation from a parent or have a de novo mutation; the proportion of cases caused by de novo mutations is unknown. Each child of an individual with a hereditary PGL/PCC syndrome has a 50% chance of inheriting the disease-causing mutation. An individual who inherits a SDHD mutation from his/her mother is at a low but not negligible risk of developing disease; each of his/her offspring is at a 50% risk of inheriting the disease-causing allele. An individual who inherits an SDHD mutation from his/her father is at high risk of manifesting paragangliomas and, to a lesser extent, pheochromocytomas. Prenatal testing for pregnancies at increased risk is possible for families in which the disease-causing mutation is known; if no laboratories offering prenatal testing are listed in the GeneTeststrade mark Laboratory Directory, such testing may be available through laboratories offering custom prenatal testing.
    References

    Pheochromocytoma

    Summary from GeneReviews: Hereditary Paraganglioma-Pheochromocytoma Syndromes Go to GeneReviews

    Disease Characteristics
    Hereditary paraganglioma-pheochromocytoma (PGL/PCC) syndromes are characterized by paragangliomas (tumors that arise from neuroendocrine tissues symmetrically distributed along the paravertebral axis from the base of the skull to the pelvis) and by pheochromocytomas (paragangliomas that are confined to the adrenal medulla). Sympathetic paragangliomas hypersecrete catecholamines; parasympathetic paragangliomas are most often nonsecretory. Extra-adrenal parasympathetic paragangliomas are located predominantly in the skull base, neck, and upper medistinum; approximately 95% of such tumors are nonsecretory. In contrast, sympathetic extra-adrenal paragangliomas are generally confined to the lower mediastinum, abdomen, and pelvis, and are typically secretory. Pheochromocytomas, which arise from the adrenal medulla, typically hypersecrete catecholamines. Symptoms of PGL/PCC result either from mass effects or catecholamine hypersecretion (e.g., sustained or paroxysmal elevations in blood pressure, headache, episodic profuse sweating, forceful palpitations, pallor, and apprehension or anxiety). The risk for malignant transformation is greater for extra-adrenal sympathetic paragangliomas than for pheochromocytomas or skull base and neck paragangliomas.
    Diagnosis Testing
    The diagnosis of hereditary PGL/PCC syndromes is based on physical examination, family history, imaging studies, biochemical testing, and molecular genetic testing. SDHA, SDHB, SDHC and SDHD are four nuclear genes that encode the four subunits of the mitochondrial enzyme succinate dehydrogenase (SDH). A fifth nuclear gene, SDHAF2 (also known as SDH5) encodes a protein that appears to be required for flavination of another SDH subunit, SDHA. These are collectively known as the SDHx genes. Mutations in MAX predispose to PCC; a subset of individuals with mutations in MAX will also develop PGL. KIF1B and EGLN1 (formerly known as PHD2) have been reported to be associated with hereditary PGL/PCC, but their clinical significance is still unclear. Molecular genetic testing for disease-causing variants in SDHA, SDHB, SDHC, SDHD, SDHAF2, and MAX is clinically available.
    Genetic Counseling
    The hereditary PGL/PCC syndromes are inherited in an autosomal dominant manner. Mutations in SDHD (PGL1) demonstrate parent-of-origin effects and generally cause disease only when the mutation is inherited from the father. Initial data suggest that mutations in SDHAF2 (PGL2) and MAX exhibit parent-of-origin effects similar to those of mutations in SDHD. A proband with a hereditary PGL/PCC syndrome may have inherited the mutation from a parent or have a de novo mutation; the proportion of cases caused by de novo mutations is unknown. Each child of an individual with a hereditary PGL/PCC syndrome has a 50% chance of inheriting the disease-causing mutation. An individual who inherits a SDHD mutation from his/her mother is at a low but not negligible risk of developing disease; each of his/her offspring is at a 50% risk of inheriting the disease-causing allele. An individual who inherits an SDHD mutation from his/her father is at high risk of manifesting paragangliomas and, to a lesser extent, pheochromocytomas. Prenatal testing for pregnancies at increased risk is possible for families in which the disease-causing mutation is known; if no laboratories offering prenatal testing are listed in the GeneTeststrade mark Laboratory Directory, such testing may be available through laboratories offering custom prenatal testing.
    References
    Protein Gene Interaction Pubs
    Tat, p14 tat Using a yeast two-hybrid system, HIV-1 Tat has been shown to bind the human succinate-ubiquinone oxidoreductase iron sulfur subunit, suggesting a role for this protein in mediating the biological activity of Tat during HIV-1 replication PubMed

    Go to the HIV-1, Human Protein Interaction Database

    Products Interactant Other Gene Complex Source Pubs Description
    BioGRID:112291 BioGRID:106537 ABCA1    BioGRID  PubMed Two-hybrid 
    BioGRID:112291 BioGRID:106556 ACAT1    BioGRID  PubMed Co-fractionation 
    BioGRID:112291 BioGRID:106994 ATP5B    BioGRID  PubMed Co-fractionation 
    BioGRID:112291 BioGRID:120937 CAND1    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:112291 BioGRID:116183 COPS5    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:112291 BioGRID:114032 CUL1    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:112291 BioGRID:114031 CUL2    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:112291 BioGRID:114030 CUL3    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:112291 BioGRID:108937 GEM    BioGRID  PubMed Two-hybrid 
    BioGRID:112291 BioGRID:109189 GSN    BioGRID  PubMed Co-fractionation 
    BioGRID:112291 BioGRID:128685 HNRNPUL2    BioGRID  PubMed Co-fractionation 
    BioGRID:112291 BioGRID:114353 IQGAP1    BioGRID  PubMed Co-fractionation 
    BioGRID:112291 BioGRID:109883 ITGA4    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:112291 BioGRID:120807 IWS1    BioGRID  PubMed Co-fractionation 
    BioGRID:112291 BioGRID:115114 KIAA0101    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:112291 BioGRID:118783 LAMTOR2    BioGRID  PubMed Co-fractionation 
    BioGRID:112291 BioGRID:120374 MRPL20    BioGRID  PubMed Co-fractionation 
    BioGRID:112291 BioGRID:122364 MRPL40    BioGRID  PubMed Co-fractionation 
    BioGRID:112291 BioGRID:124037 MRPL45    BioGRID  PubMed Co-fractionation 
    BioGRID:112291 BioGRID:120472 MRPS10    BioGRID  PubMed Co-fractionation 
    BioGRID:112291 BioGRID:122362 MRPS5    BioGRID  PubMed Co-fractionation 
    BioGRID:112291 BioGRID:110785 NDUFA10    BioGRID  PubMed Co-fractionation 
    BioGRID:112291 BioGRID:110784 NDUFA9    BioGRID  PubMed Co-fractionation 
    BioGRID:112291 BioGRID:120026 NDUFB11    BioGRID  PubMed Co-fractionation 
    BioGRID:112291 BioGRID:110792 NDUFB6    BioGRID  PubMed Co-fractionation 
    BioGRID:112291 BioGRID:110795 NDUFB9    BioGRID  PubMed Co-fractionation 
    BioGRID:112291 BioGRID:110799 NDUFS1    BioGRID  PubMed Co-fractionation 
    BioGRID:112291 BioGRID:110807 NDUFV2    BioGRID  PubMed Co-fractionation 
    BioGRID:112291 BioGRID:120280 OCIAD1    BioGRID  PubMed Co-fractionation 
    BioGRID:112291 BioGRID:111058 OXA1L    BioGRID  PubMed Co-fractionation 
    BioGRID:112291 BioGRID:125082 PIGS    BioGRID  PubMed Co-fractionation 
    BioGRID:112291 BioGRID:117079 PIK3R5    BioGRID  PubMed Two-hybrid 
    BioGRID:112291 BioGRID:115700 RBM14    BioGRID  PubMed Co-fractionation 
    BioGRID:112291 BioGRID:112290 SDHA    BioGRID  PubMed Co-fractionation 
    BioGRID:112291 BioGRID:122862 SLC25A22    BioGRID  PubMed Co-fractionation 
    BioGRID:112291 BioGRID:115547 SPRY2    BioGRID  PubMed Two-hybrid 
    BioGRID:112291 BioGRID:112620 SSBP1    BioGRID  PubMed Co-fractionation 
    BioGRID:112291 BioGRID:124961 TIMM50    BioGRID  PubMed Co-fractionation 
    BioGRID:112291 BioGRID:116158 TMED2    BioGRID  PubMed Co-fractionation 
    BioGRID:112291 BioGRID:115716 TOMM40    BioGRID  PubMed Co-fractionation 
    BioGRID:112291 BioGRID:120030 TOMM7    BioGRID  PubMed Co-fractionation 
    BioGRID:112291 BioGRID:113011 TP53BP1    BioGRID  PubMed Affinity Capture-Western; Two-hybrid 
    BioGRID:112291 BioGRID:113164 UBC    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:112291 BioGRID:113232 UQCRFS1    BioGRID  PubMed Co-fractionation 

    Markers

    Homology

    Clone Names

    • FLJ92337

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    2 iron, 2 sulfur cluster binding ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    3 iron, 4 sulfur cluster binding ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    4 iron, 4 sulfur cluster binding ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    electron carrier activity IEA
    Inferred from Electronic Annotation
    more info
     
    metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    succinate dehydrogenase (ubiquinone) activity IEA
    Inferred from Electronic Annotation
    more info
     
    ubiquinone binding ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    Process Evidence Code Pubs
    aerobic respiration TAS
    Traceable Author Statement
    more info
    PubMed 
    respiratory electron transport chain TAS
    Traceable Author Statement
    more info
     
    small molecule metabolic process TAS
    Traceable Author Statement
    more info
     
    succinate metabolic process IEA
    Inferred from Electronic Annotation
    more info
     
    tricarboxylic acid cycle IEA
    Inferred from Electronic Annotation
    more info
     
    tricarboxylic acid cycle TAS
    Traceable Author Statement
    more info
     
    Component Evidence Code Pubs
    mitochondrial inner membrane ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    mitochondrial inner membrane TAS
    Traceable Author Statement
    more info
     
    mitochondrial respiratory chain complex II ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    mitochondrion IDA
    Inferred from Direct Assay
    more info
     
    Preferred Names
    succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial
    Names
    succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial
    iron-sulfur subunit of complex II
    NP_002991.2

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_012340.1 RefSeqGene

      Range
      5001..40449
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_003000.2NP_002991.2  succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial precursor

      Status: REVIEWED

      Source sequence(s)
      BC007840, BF796275, BU554163
      Consensus CDS
      CCDS176.1
      UniProtKB/Swiss-Prot
      P21912
      Related
      ENSP00000364649, OTTHUMP00000002396, ENST00000375499, OTTHUMT00000006603
      Conserved Domains (2) summary
      PRK05950
      Location:41272
      Blast Score: 1124
      sdhB; succinate dehydrogenase iron-sulfur subunit; Reviewed
      pfam13085
      Location:41147
      Blast Score: 367
      Fer2_3; 2Fe-2S iron-sulfur cluster binding domain

    RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 104

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh37.p10 Primary Assembly

    Genomic

    1. NC_000001.10 Reference GRCh37.p10 Primary Assembly

      Range
      17345217..17380665, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate HuRef

    Genomic

    1. AC_000133.1 Alternate HuRef

      Range
      15589311..15624677, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate CHM1_1.0

    Genomic

    1. NC_018912.1 Alternate CHM1_1.0

      Range
      17551367..17586812, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

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