These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in this
section to the one reported in Genomic regions, transcripts, and products above.
Genomic
-
NG_030013.1 RefSeqGene
- Range
- 5001..22585
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
NM_021948.4 → NP_068767.3 brevican core protein isoform 1 precursor
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
- Source sequence(s)
-
AL365181, AL590666, AY358372, BC027971, DB297352
- Consensus CDS
-
CCDS1149.1
- UniProtKB/Swiss-Prot
-
Q96GW7
- Related
- ENSP00000331210, OTTHUMP00000032164, ENST00000329117, OTTHUMT00000081844
- Conserved Domains (7) summary
-
- cd00054
Location:652 – 682
Blast Score: 99
- EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
- cd03517
Location:157 – 251
Blast Score: 436
- Link_domain_CSPGs_modules_1_3; Link_domain_CSPGs_modules_1_3; this extracellular link domain is found in the first and third link modules of the chondroitin sulfate proteoglycan core protein (CSPG) aggrecan. In addition, it is found in the first link module of three other CSPGs: ...
- cd03520
Location:258 – 353
Blast Score: 429
- Link_domain_CSPGs_modules_2_4; Link_domain_CSPGs_modules_2_4; this link domain is found in the second and fourth link modules of the chondroitin sulfate proteoglycan core protein (CSPG) aggrecan and, in the second link module of three other CSPGs: versican, neurocan, and brevican. The ...
- cd00033
Location:815 – 872
Blast Score: 121
- CCP; Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system
- pfam07686
Location:42 – 154
Blast Score: 124
- V-set; Immunoglobulin V-set domain
- cl02432
Location:688 – 811
Blast Score: 601
- CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain
- cl11960
Location:49 – 158
Blast Score: 331
- Ig; Immunoglobulin domain
-
NM_198427.1 → NP_940819.1 brevican core protein isoform 2 precursor
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) differs in the 3' UTR, and coding region, compared to variant 1. The encoded isoform (2) is shorter and has a distinct C-terminus, compared to isoform 1.
- Source sequence(s)
-
AF229053, AW298823, AY358372
- Consensus CDS
-
CCDS1150.1
- UniProtKB/Swiss-Prot
-
Q96GW7
- Related
- ENSP00000354925, OTTHUMP00000032165, ENST00000361588, OTTHUMT00000081845
- Conserved Domains (4) summary
-
- cd03517
Location:157 – 251
Blast Score: 438
- Link_domain_CSPGs_modules_1_3; Link_domain_CSPGs_modules_1_3; this extracellular link domain is found in the first and third link modules of the chondroitin sulfate proteoglycan core protein (CSPG) aggrecan. In addition, it is found in the first link module of three other CSPGs: ...
- cd03520
Location:258 – 353
Blast Score: 431
- Link_domain_CSPGs_modules_2_4; Link_domain_CSPGs_modules_2_4; this link domain is found in the second and fourth link modules of the chondroitin sulfate proteoglycan core protein (CSPG) aggrecan and, in the second link module of three other CSPGs: versican, neurocan, and brevican. The ...
- pfam07686
Location:42 – 154
Blast Score: 125
- V-set; Immunoglobulin V-set domain
- cl11960
Location:49 – 158
Blast Score: 327
- Ig; Immunoglobulin domain
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as RefSeqs
for chromosomes and scaffolds (contigs) from both reference and alternate assemblies.
Model RNAs and proteins are also reported here.
Reference GRCh37.p5 Primary Assembly
Genomic
-
NC_000001.10 Reference GRCh37.p5 Primary Assembly
- Range
- 156611740..156629320
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
Alternate HuRef
Genomic
-
AC_000133.1 Alternate HuRef
- Range
- 127969333..127986918
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)