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    miaB (dimethylallyl)adenosine tRNA methylthiotransferase [ Xanthomonas oryzae pv. oryzae PXO99A ]

    Gene ID: 6305409, updated on 18-May-2013
    Gene symbol
    miaB
    Gene description
    (dimethylallyl)adenosine tRNA methylthiotransferase
    Locus tag
    PXO_00446
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xanthomonas oryzae pv. oryzae PXO99A (strain: PXO99A, pathovar: oryzae)
    Lineage
    Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas
    Sequence :
    NC_010717.1 (1954484..1955866, complement)

    NC_010717.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene ATP-binding protein Neighboring gene glutathione S-transferase Neighboring gene glutathione S-transferase Neighboring gene repressor

    Go to nucleotideGraphics FASTA GenBank

    Go to reference sequence details

    Related articles in PubMed

    1. Genome sequence and rapid evolution of the rice pathogen Xanthomonas oryzae pv. oryzae PXO99A. Salzberg SL, et al. BMC Genomics, 2008 May 1. PMID 18452608.

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Submit: New GeneRIF Correction
    Names
    (dimethylallyl)adenosine tRNA methylthiotransferase
    YP_001913051.1
    • catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A)

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_010717.1

      Range
      1954484..1955866, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. YP_001913051.1 (dimethylallyl)adenosine tRNA methylthiotransferase [Xanthomonas oryzae pv. oryzae PXO99A]

      Status: PROVISIONAL

      UniProtKB/Swiss-Prot
      B2SW86
      Conserved Domains (4) summary
      cd01335
      Location:165 – 360
      Blast Score: 109
      Radical_SAM; Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. ...
      pfam01938
      Location:394 – 453
      Blast Score: 141
      TRAM; TRAM domain
      pfam00919
      Location:13 – 113
      Blast Score: 360
      UPF0004; Uncharacterized protein family UPF0004
      PRK14325
      Location:13 – 453
      Blast Score: 2223
      PRK14325; (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
    Nucleotide Protein
    Heading Accession and Version
    genomic CP000967.1 ACD58519.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases

      Supplemental Content

      Table of contents

      Related information

      • BioProjects
        BioProjects related to a gene
      • Conserved Domains
        Conserved Domain Database Links between Entrez Gene and Conserved Domain Database (CDD) are calculated from the domains annotated by the CDD group on Reference Sequence proteins.
      • Full text in PMC
        PMC links
      • Full text in PMC_nucleotide
        Full text in PubMedCentral identified from shared sequence links
      • Genome
        Genome records having the gene annotated on corresponding genomic reference sequence.
      • Nucleotide
        Link to related Nucleotide entry
      • Protein
        Link to related protein entry
      • Protein Clusters
        Related Protein Clusters
      • PubMed
        Links between Gene and PubMed are the result of the following: 1. Manual curation within NCBI. Part of the process of generating a REVIEWED RefSeq is an analysis of the current literature. Papers that are seminal in defining the gene, its sequence, and its function are added to the record at that time. Alert users point out gaps or errors in papers associated with a Gene record. These messages are reviewed and implemented as required. 2. Integration of information from other public databases. Gene integrates gene-citation from resources external to NCBI such as model organism-specific databases, Gene Ontology (GO), groups curating interactions, and sequence databases. The assumption in using these source is that they report citations specific to a gene in a known species. Gene does not process citations from OMIM automatically, because many of citations in OMIM refer to studies of genes in species other than human.
      • PubMed(nucleotide/PMC)
        Citations in PubMed identified from shared sequence and PMC links.
      • RefSeq Proteins
        Link to Protein RefSeqs
      • Taxonomy
        Link to related taxonomy entry

      Links to other resources

      General information

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